RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 RGS17Q9UGC6 210 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-201ENST00000404210 ONECUT3O60422 494 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-201ENST00000404210 AMOTQ4VCS5 1084 aa16.31■□□□□ 0.2
LINC00339-201ENST00000404210 PLEKHO1Q53GL0 409 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-201ENST00000404210 CCDC146Q8IYE0 955 aa16.3■□□□□ 0.2
LINC00339-201ENST00000404210 PHACTR3Q96KR7 559 aa16.3■□□□□ 0.2
LINC00339-201ENST00000404210 MAPK8IP3Q9UPT6 1336 aa16.29■□□□□ 0.2
LINC00339-201ENST00000404210 RBM6P78332 1123 aaKnown RBP16.29■□□□□ 0.2
LINC00339-201ENST00000404210 SPG7Q9UQ90 795 aa16.29■□□□□ 0.2
LINC00339-201ENST00000404210 DISP2A7MBM2 1401 aa16.28■□□□□ 0.2
LINC00339-201ENST00000404210 EXOC5O00471 708 aa16.28■□□□□ 0.2
LINC00339-201ENST00000404210 FAM98CQ17RN3 349 aaKnown RBP16.28■□□□□ 0.2
LINC00339-201ENST00000404210 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
LINC00339-201ENST00000404210 ZCRB1Q8TBF4 217 aaKnown RBP16.28■□□□□ 0.2
LINC00339-201ENST00000404210 GLI3P10071 1580 aa16.27■□□□□ 0.2
LINC00339-201ENST00000404210 APAF1O14727 1248 aa16.27■□□□□ 0.2
LINC00339-201ENST00000404210 MTHFSDQ2M296 383 aaKnown RBP16.27■□□□□ 0.2
LINC00339-201ENST00000404210 GAS2L2Q8NHY3 880 aa16.27■□□□□ 0.2
LINC00339-201ENST00000404210 MEGF6O75095 1541 aa16.27■□□□□ 0.2
LINC00339-201ENST00000404210 PARP4Q9UKK3 1724 aaKnown RBP16.27■□□□□ 0.19
LINC00339-201ENST00000404210 OVOS2A0A0G2JMS6 1433 aa16.27■□□□□ 0.19
LINC00339-201ENST00000404210 RXRBP28702 533 aa16.26■□□□□ 0.19
LINC00339-201ENST00000404210 TMPOP42166 694 aaKnown RBP16.26■□□□□ 0.19
LINC00339-201ENST00000404210 NFE2L2Q16236 605 aa16.26■□□□□ 0.19
LINC00339-201ENST00000404210 NGEFQ8N5V2 710 aa16.26■□□□□ 0.19
LINC00339-201ENST00000404210 WNK3Q9BYP7 1800 aa16.26■□□□□ 0.19
LINC00339-201ENST00000404210 DDB1Q16531 1140 aa16.25■□□□□ 0.19
LINC00339-201ENST00000404210 POTEAQ6S8J7 498 aa16.25■□□□□ 0.19
LINC00339-201ENST00000404210 RIPK4P57078 832 aa16.24■□□□□ 0.19
LINC00339-201ENST00000404210 IFNL2Q8IZJ0 200 aa16.24■□□□□ 0.19
LINC00339-201ENST00000404210 HTATSF1O43719 755 aaKnown RBP16.23■□□□□ 0.19
LINC00339-201ENST00000404210 AKAP4Q5JQC9 854 aa16.23■□□□□ 0.19
LINC00339-201ENST00000404210 ZNF530Q6P9A1 599 aaPredicted RBP16.23■□□□□ 0.19
LINC00339-201ENST00000404210 PKD1L3Q7Z443 1732 aa16.22■□□□□ 0.19
LINC00339-201ENST00000404210 C1orf141Q5JVX7 400 aa16.22■□□□□ 0.19
LINC00339-201ENST00000404210 SEPT12Q8IYM1 358 aa16.22■□□□□ 0.19
LINC00339-201ENST00000404210 PCDH11XQ9BZA7 1347 aa16.21■□□□□ 0.19
LINC00339-201ENST00000404210 PCDH11YQ9BZA8 1340 aa16.21■□□□□ 0.19
LINC00339-201ENST00000404210 GNAT3A8MTJ3 354 aa16.21■□□□□ 0.19
LINC00339-201ENST00000404210 CYP27B1O15528 508 aa16.21■□□□□ 0.19
LINC00339-201ENST00000404210 PHKG2P15735 406 aa16.21■□□□□ 0.19
LINC00339-201ENST00000404210 NKX1-1Q15270 411 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-201ENST00000404210 NEUROD2Q15784 382 aa16.21■□□□□ 0.19
LINC00339-201ENST00000404210 CCDC27Q2M243 656 aa16.21■□□□□ 0.19
LINC00339-201ENST00000404210 DDX54Q8TDD1 881 aaKnown RBP16.21■□□□□ 0.19
LINC00339-201ENST00000404210 THSD7AQ9UPZ6 1657 aa16.21■□□□□ 0.18
LINC00339-201ENST00000404210 DLG5Q8TDM6 1919 aa16.2■□□□□ 0.18
LINC00339-201ENST00000404210 A0A0G2JS52 829 aa16.2■□□□□ 0.18
LINC00339-201ENST00000404210 HSP90AB1P08238 724 aaKnown RBP16.2■□□□□ 0.18
LINC00339-201ENST00000404210 MYT1Q01538 1121 aa16.2■□□□□ 0.18
LINC00339-201ENST00000404210 LMOD3Q0VAK6 560 aa16.2■□□□□ 0.18
LINC00339-201ENST00000404210 PDE3BQ13370 1112 aa16.2■□□□□ 0.18
LINC00339-201ENST00000404210 RRP7AQ9Y3A4 280 aaKnown RBP16.2■□□□□ 0.18
LINC00339-201ENST00000404210 RTF1Q92541 710 aaKnown RBP16.19■□□□□ 0.18
LINC00339-201ENST00000404210 TRIM35Q9UPQ4 493 aa16.19■□□□□ 0.18
LINC00339-201ENST00000404210 TNS2Q63HR2 1409 aa16.19■□□□□ 0.18
LINC00339-201ENST00000404210 MAP3K5Q99683 1374 aa16.18■□□□□ 0.18
LINC00339-201ENST00000404210 HNRNPUQ00839 825 aaKnown RBP eCLIP16.18■□□□□ 0.18
LINC00339-201ENST00000404210 MARCH10Q8NA82 808 aaPredicted RBP16.18■□□□□ 0.18
LINC00339-201ENST00000404210 SHANK3Q9BYB0 1731 aa16.18■□□□□ 0.18
LINC00339-201ENST00000404210 LRRC37A3O60309 1634 aa16.17■□□□□ 0.18
LINC00339-201ENST00000404210 MAPK8IP2Q13387 824 aaPredicted RBP16.17■□□□□ 0.18
LINC00339-201ENST00000404210 DCAF5Q96JK2 942 aa16.17■□□□□ 0.18
LINC00339-201ENST00000404210 RNMTO43148 476 aaKnown RBP16.16■□□□□ 0.18
LINC00339-201ENST00000404210 MPRIPQ6WCQ1 1025 aa16.16■□□□□ 0.18
LINC00339-201ENST00000404210 WWC1Q8IX03 1113 aa16.16■□□□□ 0.18
LINC00339-201ENST00000404210 IL17REQ8NFR9 667 aa16.16■□□□□ 0.18
LINC00339-201ENST00000404210 LGR6Q9HBX8 967 aa16.16■□□□□ 0.18
LINC00339-201ENST00000404210 SALL2Q9Y467 1007 aaPredicted RBP16.16■□□□□ 0.18
LINC00339-201ENST00000404210 SENP3-EIF4A1A0A087X0R7 540 aa16.15■□□□□ 0.18
LINC00339-201ENST00000404210 KRT27Q7Z3Y8 459 aa16.15■□□□□ 0.18
LINC00339-201ENST00000404210 WDR63Q8IWG1 891 aa16.15■□□□□ 0.18
LINC00339-201ENST00000404210 BRWD3Q6RI45 1802 aa16.13■□□□□ 0.17
LINC00339-201ENST00000404210 ERVV-2B6SEH9 535 aa16.13■□□□□ 0.17
LINC00339-201ENST00000404210 CALD1Q05682 793 aaKnown RBP16.13■□□□□ 0.17
LINC00339-201ENST00000404210 DCTN1Q14203 1278 aa16.13■□□□□ 0.17
LINC00339-201ENST00000404210 MCM10Q7L590 875 aa16.13■□□□□ 0.17
LINC00339-201ENST00000404210 ZNF521Q96K83 1311 aa16.13■□□□□ 0.17
LINC00339-201ENST00000404210 SCN11AQ9UI33 1791 aa16.13■□□□□ 0.17
LINC00339-201ENST00000404210 CEMIPQ8WUJ3 1361 aa16.13■□□□□ 0.17
LINC00339-201ENST00000404210 VIRMAQ69YN4 1812 aaKnown RBP16.12■□□□□ 0.17
LINC00339-201ENST00000404210 ADAMTS7Q9UKP4 1686 aa16.11■□□□□ 0.17
LINC00339-201ENST00000404210 BCL9O00512 1426 aa16.11■□□□□ 0.17
LINC00339-201ENST00000404210 IL16Q14005 1332 aa16.11■□□□□ 0.17
LINC00339-201ENST00000404210 ZBED9Q6R2W3 1325 aa16.11■□□□□ 0.17
LINC00339-201ENST00000404210 RGS12O14924 1447 aa16.11■□□□□ 0.17
LINC00339-201ENST00000404210 KDM6AO15550 1401 aaPredicted RBP16.11■□□□□ 0.17
LINC00339-201ENST00000404210 TEFQ10587 303 aa16.1■□□□□ 0.17
LINC00339-201ENST00000404210 TAF7Q15545 349 aaPredicted RBP16.1■□□□□ 0.17
LINC00339-201ENST00000404210 FAM196AQ6ZSG2 479 aa16.1■□□□□ 0.17
LINC00339-201ENST00000404210 YTHDC1Q96MU7 727 aaKnown RBP16.1■□□□□ 0.17
LINC00339-201ENST00000404210 THUMPD2Q9BTF0 503 aaKnown RBP16.1■□□□□ 0.17
LINC00339-201ENST00000404210 SLC52A2Q9HAB3 445 aa16.1■□□□□ 0.17
LINC00339-201ENST00000404210 KAT6BQ8WYB5 2073 aa16.09■□□□□ 0.17
LINC00339-201ENST00000404210 CABP4P57796 275 aa16.09■□□□□ 0.17
LINC00339-201ENST00000404210 GOLGA2Q08379 1002 aa16.09■□□□□ 0.17
LINC00339-201ENST00000404210 BABAM1Q9NWV8 329 aa16.09■□□□□ 0.17
LINC00339-201ENST00000404210 NFATC2IPQ8NCF5 419 aa16.08■□□□□ 0.16
LINC00339-201ENST00000404210 CFAP44Q96MT7 982 aa16.08■□□□□ 0.16
LINC00339-201ENST00000404210 ZNF853P0CG23 659 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms