RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SFPQP23246 707 aaKnown RBP eCLIP11.01□□□□□ -0.65
COL28A1-201ENST00000399429 IL1RAPL2Q9NP60 686 aa11.01□□□□□ -0.65
COL28A1-201ENST00000399429 CASTP20810 708 aaKnown RBP11□□□□□ -0.65
COL28A1-201ENST00000399429 RDXP35241 583 aaKnown RBP11□□□□□ -0.65
COL28A1-201ENST00000399429 ARHGAP29Q52LW3 1261 aa11□□□□□ -0.65
COL28A1-201ENST00000399429 HSP90AB3PQ58FF7 597 aa11□□□□□ -0.65
COL28A1-201ENST00000399429 ACBD3Q9H3P7 528 aa11□□□□□ -0.65
COL28A1-201ENST00000399429 PRG4Q92954 1404 aaPredicted RBP11□□□□□ -0.65
COL28A1-201ENST00000399429 DNM1Q05193 864 aaKnown RBP11□□□□□ -0.65
COL28A1-201ENST00000399429 LRMPQ12912 555 aa11□□□□□ -0.65
COL28A1-201ENST00000399429 ZNF692Q9BU19 519 aaPredicted RBP11□□□□□ -0.65
COL28A1-201ENST00000399429 SPAG9O60271 1321 aaKnown RBP11□□□□□ -0.65
COL28A1-201ENST00000399429 CCDC34Q96HJ3 373 aa11□□□□□ -0.65
COL28A1-201ENST00000399429 JAKMIP1Q96N16 626 aaKnown RBP11□□□□□ -0.65
COL28A1-201ENST00000399429 CYP46A1Q9Y6A2 500 aa11□□□□□ -0.65
COL28A1-201ENST00000399429 ZNF521Q96K83 1311 aa10.99□□□□□ -0.65
COL28A1-201ENST00000399429 PATL2C9JE40 543 aaKnown RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 ZSCAN22P10073 491 aaPredicted RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 AXDND1Q5T1B0 1012 aaPredicted RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 CWC27Q6UX04 472 aaKnown RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 RPAP2Q8IXW5 612 aaPredicted RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 LRRCC1Q9C099 1032 aa10.99□□□□□ -0.65
COL28A1-201ENST00000399429 C9orf84Q5VXU9 1444 aa10.99□□□□□ -0.65
COL28A1-201ENST00000399429 NSD3Q9BZ95 1437 aa10.99□□□□□ -0.65
COL28A1-201ENST00000399429 SURF6O75683 361 aaKnown RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 IRX5P78411 483 aaPredicted RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 C14orf37Q86TY3 774 aa10.99□□□□□ -0.65
COL28A1-201ENST00000399429 TRMT2AQ8IZ69 625 aaKnown RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 ZSWIM4Q9H7M6 989 aa10.99□□□□□ -0.65
COL28A1-201ENST00000399429 CCDC9Q9Y3X0 531 aaKnown RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 MINK1Q8N4C8 1332 aaPredicted RBP10.99□□□□□ -0.65
COL28A1-201ENST00000399429 ALDH1L2Q3SY69 923 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 PLEKHM2Q8IWE5 1019 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 DNAJC25Q9H1X3 360 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 EPRSP07814 1512 aaKnown RBP10.98□□□□□ -0.65
COL28A1-201ENST00000399429 SERPINC1P01008 464 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 NEK11Q8NG66 645 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 PDRG1Q9NUG6 133 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 CCDC171Q6TFL3 1326 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 ME1P48163 572 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 NAA30Q147X3 362 aaPredicted RBP10.98□□□□□ -0.65
COL28A1-201ENST00000399429 CEP57L1Q8IYX8 460 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 SYTL4Q96C24 671 aaPredicted RBP10.98□□□□□ -0.65
COL28A1-201ENST00000399429 DACT1Q9NYF0 836 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 ZNF215Q9UL58 517 aaPredicted RBP10.98□□□□□ -0.65
COL28A1-201ENST00000399429 CCP110O43303 1012 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 EIF3JO75822 258 aaKnown RBP10.98□□□□□ -0.65
COL28A1-201ENST00000399429 SLC4A2P04920 1241 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 TYRO3Q06418 890 aa10.98□□□□□ -0.65
COL28A1-201ENST00000399429 OTUD7AQ8TE49 926 aaPredicted RBP10.98□□□□□ -0.65
COL28A1-201ENST00000399429 POLA1P09884 1462 aaPredicted RBP10.97□□□□□ -0.65
COL28A1-201ENST00000399429 GJB2P29033 226 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 DHX37Q8IY37 1157 aaKnown RBP10.97□□□□□ -0.65
COL28A1-201ENST00000399429 CNTROBQ8N137 903 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 SRCIN1Q9C0H9 1055 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 DNAI1Q9UI46 699 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 FANCD2Q9BXW9 1451 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 PES1O00541 588 aaKnown RBP10.97□□□□□ -0.65
COL28A1-201ENST00000399429 MNAT1P51948 309 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 DRC1Q96MC2 740 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 LIMCH1Q9UPQ0 1083 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 PDS5BQ9NTI5 1447 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 NEMFO60524 1076 aa10.97□□□□□ -0.65
COL28A1-201ENST00000399429 MCM6Q14566 821 aa10.96□□□□□ -0.65
COL28A1-201ENST00000399429 TERF2Q15554 542 aa10.96□□□□□ -0.65
COL28A1-201ENST00000399429 IFIT2P09913 472 aaKnown RBP10.96□□□□□ -0.65
COL28A1-201ENST00000399429 SYT10Q6XYQ8 523 aa10.96□□□□□ -0.65
COL28A1-201ENST00000399429 KIAA1524Q8TCG1 905 aa10.96□□□□□ -0.65
COL28A1-201ENST00000399429 ERO1AQ96HE7 468 aa10.96□□□□□ -0.65
COL28A1-201ENST00000399429 GNAI2P04899 355 aa10.96□□□□□ -0.66
COL28A1-201ENST00000399429 CAPN2P17655 700 aa10.96□□□□□ -0.66
COL28A1-201ENST00000399429 ZNF710Q8N1W2 664 aa10.96□□□□□ -0.66
COL28A1-201ENST00000399429 FAM193AP78312 1265 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 NUTM1Q86Y26 1132 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 SCAND2PQ9GZW5 306 aaPredicted RBP10.95□□□□□ -0.66
COL28A1-201ENST00000399429 TMEM51Q9NW97 253 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 GAPVD1Q14C86 1478 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 ERLIN1O75477 346 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 TTC31Q49AM3 519 aaPredicted RBP10.95□□□□□ -0.66
COL28A1-201ENST00000399429 ZNF428Q96B54 188 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 DDX11Q96FC9 970 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 CCDC69A6NI79 296 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 TPM1P09493 284 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 EFCAB2Q5VUJ9 269 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 TMC6Q7Z403 805 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 BRD1O95696 1058 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 F13A1P00488 732 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 CENPHQ9H3R5 247 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 ARFGAP3Q9NP61 516 aa10.95□□□□□ -0.66
COL28A1-201ENST00000399429 NCBP1Q09161 790 aaKnown RBP10.94□□□□□ -0.66
COL28A1-201ENST00000399429 DNAAF4Q8WXU2 420 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 INSRP06213 1382 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 PSMA5P28066 241 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 USP8P40818 1118 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 DCTN1Q14203 1278 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 ERCC4Q92889 916 aaPredicted RBP10.94□□□□□ -0.66
COL28A1-201ENST00000399429 DDX19AQ9NUU7 478 aaKnown RBP10.94□□□□□ -0.66
COL28A1-201ENST00000399429 SPG7Q9UQ90 795 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 HNRNPH2P55795 449 aaKnown RBP10.94□□□□□ -0.66
COL28A1-201ENST00000399429 ERCC6LQ2NKX8 1250 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms