RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 WDR66Q8TBY9 1149 aa12.05□□□□□ -0.48
COL4A4-201ENST00000396625 UBE2Q2Q8WVN8 375 aa12.05□□□□□ -0.48
COL4A4-201ENST00000396625 MAP3K11Q16584 847 aa12.05□□□□□ -0.48
COL4A4-201ENST00000396625 CCDC57Q2TAC2 916 aa12.05□□□□□ -0.48
COL4A4-201ENST00000396625 POTEB2H3BUK9 544 aa12.04□□□□□ -0.48
COL4A4-201ENST00000396625 KIF6Q6ZMV9 814 aa12.04□□□□□ -0.48
COL4A4-201ENST00000396625 PPP4R3BQ5MIZ7 849 aa12.04□□□□□ -0.48
COL4A4-201ENST00000396625 SOGA3Q5TF21 947 aa12.04□□□□□ -0.48
COL4A4-201ENST00000396625 CEP112Q8N8E3 955 aa12.04□□□□□ -0.48
COL4A4-201ENST00000396625 HSPA4P34932 840 aa12.04□□□□□ -0.48
COL4A4-201ENST00000396625 MSL1Q68DK7 614 aa12.04□□□□□ -0.48
COL4A4-201ENST00000396625 BBXQ8WY36 941 aaPredicted RBP12.04□□□□□ -0.48
COL4A4-201ENST00000396625 NUP133Q8WUM0 1156 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 ALS2CR12Q96Q35 445 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 PSMD1Q99460 953 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 LMAN1P49257 510 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 CAMK4Q16566 473 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 SMARCC1Q92922 1105 aaPredicted RBP12.03□□□□□ -0.48
COL4A4-201ENST00000396625 NACAP1Q9BZK3 213 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 DNA2P51530 1060 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 MAATS1Q7Z4T9 603 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.03□□□□□ -0.48
COL4A4-201ENST00000396625 LARP1Q6PKG0 1096 aaKnown RBP12.03□□□□□ -0.48
COL4A4-201ENST00000396625 ANKS4BQ8N8V4 417 aa12.03□□□□□ -0.48
COL4A4-201ENST00000396625 FSD2A1L4K1 749 aa12.02□□□□□ -0.48
COL4A4-201ENST00000396625 CUX1P39880 1505 aa12.02□□□□□ -0.48
COL4A4-201ENST00000396625 HLTFQ14527 1009 aaKnown RBP eCLIP12.02□□□□□ -0.48
COL4A4-201ENST00000396625 IRX3P78415 501 aaPredicted RBP12.02□□□□□ -0.48
COL4A4-201ENST00000396625 SPECC1Q5M775 1068 aa12.02□□□□□ -0.48
COL4A4-201ENST00000396625 SREK1Q8WXA9 508 aaKnown RBP12.02□□□□□ -0.48
COL4A4-201ENST00000396625 NUP88Q99567 741 aaPredicted RBP12.02□□□□□ -0.48
COL4A4-201ENST00000396625 CCDC150Q8NCX0 1101 aa12.02□□□□□ -0.49
COL4A4-201ENST00000396625 PPP1R14CQ8TAE6 165 aa12.02□□□□□ -0.49
COL4A4-201ENST00000396625 FKBP15Q5T1M5 1219 aa12.02□□□□□ -0.49
COL4A4-201ENST00000396625 TOP2AP11388 1531 aaKnown RBP12.02□□□□□ -0.49
COL4A4-201ENST00000396625 RRBP1Q9P2E9 1410 aaKnown RBP12.02□□□□□ -0.49
COL4A4-201ENST00000396625 CTNNA2P26232 953 aa12.02□□□□□ -0.49
COL4A4-201ENST00000396625 C16orf45Q96MC5 204 aaPredicted RBP12.02□□□□□ -0.49
COL4A4-201ENST00000396625 CEP131Q9UPN4 1083 aa12.02□□□□□ -0.49
COL4A4-201ENST00000396625 CECR2Q9BXF3 1484 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 CNTLNQ9NXG0 1405 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 MINK1Q8N4C8 1332 aaPredicted RBP12.01□□□□□ -0.49
COL4A4-201ENST00000396625 IKBKGQ9Y6K9 419 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 MPHOSPH10O00566 681 aaKnown RBP12.01□□□□□ -0.49
COL4A4-201ENST00000396625 HMOX1P09601 288 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 FAM114A1Q8IWE2 563 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 HOMER2Q9NSB8 354 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 CLIP2Q9UDT6 1046 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 ZNF76P36508 570 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 NOL3O60936 208 aaKnown RBP12.01□□□□□ -0.49
COL4A4-201ENST00000396625 TSNARE1Q96NA8 513 aa12.01□□□□□ -0.49
COL4A4-201ENST00000396625 SURF6O75683 361 aaKnown RBP12.01□□□□□ -0.49
COL4A4-201ENST00000396625 PSME1Q06323 249 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 KIF4BQ2VIQ3 1234 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 NAA15Q9BXJ9 866 aaKnown RBP12□□□□□ -0.49
COL4A4-201ENST00000396625 SMG6Q86US8 1419 aaKnown RBP12□□□□□ -0.49
COL4A4-201ENST00000396625 FBF1Q8TES7 1133 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 CCDC158Q5M9N0 1113 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 GNAI3P08754 354 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 CCDC6Q16204 474 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 CACNA2D4Q7Z3S7 1137 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 APBB1IPQ7Z5R6 666 aaPredicted RBP12□□□□□ -0.49
COL4A4-201ENST00000396625 CCDC83Q8IWF9 413 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 TSG101Q99816 390 aa12□□□□□ -0.49
COL4A4-201ENST00000396625 NOL12Q9UGY1 213 aaKnown RBP eCLIP12□□□□□ -0.49
COL4A4-201ENST00000396625 V9GYY5 206 aaPredicted RBP12□□□□□ -0.49
COL4A4-201ENST00000396625 TOP1P11387 765 aaKnown RBP11.99□□□□□ -0.49
COL4A4-201ENST00000396625 MXRA7P84157 204 aa11.99□□□□□ -0.49
COL4A4-201ENST00000396625 WASF1Q92558 559 aa11.99□□□□□ -0.49
COL4A4-201ENST00000396625 NSRP1Q9H0G5 558 aaKnown RBP11.99□□□□□ -0.49
COL4A4-201ENST00000396625 PABPN1LA6NDY0 278 aaKnown RBP11.99□□□□□ -0.49
COL4A4-201ENST00000396625 KIF3CO14782 793 aa11.99□□□□□ -0.49
COL4A4-201ENST00000396625 DDX46Q7L014 1031 aaKnown RBP11.99□□□□□ -0.49
COL4A4-201ENST00000396625 C1orf115Q9H7X2 142 aa11.99□□□□□ -0.49
COL4A4-201ENST00000396625 A0A1W2PRG0 241 aa11.99□□□□□ -0.49
COL4A4-201ENST00000396625 CPSF2Q9P2I0 782 aaKnown RBP11.99□□□□□ -0.49
COL4A4-201ENST00000396625 SRRTQ9BXP5 876 aaKnown RBP11.99□□□□□ -0.49
COL4A4-201ENST00000396625 CNNM1Q9NRU3 951 aa11.99□□□□□ -0.49
COL4A4-201ENST00000396625 KLHL10Q6JEL2 608 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 URI1O94763 535 aaPredicted RBP11.98□□□□□ -0.49
COL4A4-201ENST00000396625 GNAI2P04899 355 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 CCDC30Q5VVM6 783 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 PAFAH1B1P43034 410 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 CCDC183Q5T5S1 534 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 RAB3IL1Q8TBN0 382 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 UBAC1Q9BSL1 405 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 HYPKQ9NX55 129 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 CFAP58Q5T655 872 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 TMX1Q9H3N1 280 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 FGFR1OPO95684 399 aaKnown RBP11.98□□□□□ -0.49
COL4A4-201ENST00000396625 MAP4K4O95819 1239 aaPredicted RBP11.98□□□□□ -0.49
COL4A4-201ENST00000396625 IVLP07476 585 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 USO1O60763 962 aaKnown RBP11.98□□□□□ -0.49
COL4A4-201ENST00000396625 CASTP20810 708 aaKnown RBP11.98□□□□□ -0.49
COL4A4-201ENST00000396625 CEP83Q9Y592 693 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 EFCAB2Q5VUJ9 269 aa11.98□□□□□ -0.49
COL4A4-201ENST00000396625 PDRG1Q9NUG6 133 aa11.97□□□□□ -0.49
COL4A4-201ENST00000396625 SEC63Q9UGP8 760 aaKnown RBP11.97□□□□□ -0.49
COL4A4-201ENST00000396625 MROH2BQ7Z745 1585 aa11.97□□□□□ -0.49
COL4A4-201ENST00000396625 PDS5BQ9NTI5 1447 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms