RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 USP26Q9BXU7 913 aa19.54■□□□□ 0.72
PCDH1-203ENST00000394536 ABCC1P33527 1531 aa19.54■□□□□ 0.72
PCDH1-203ENST00000394536 PRIM1P49642 420 aaKnown RBP19.53■□□□□ 0.72
PCDH1-203ENST00000394536 CEP85Q6P2H3 762 aa19.53■□□□□ 0.72
PCDH1-203ENST00000394536 SIRT2Q8IXJ6 389 aa19.53■□□□□ 0.72
PCDH1-203ENST00000394536 PKNOX2Q96KN3 472 aa19.53■□□□□ 0.72
PCDH1-203ENST00000394536 FSD2A1L4K1 749 aa19.53■□□□□ 0.72
PCDH1-203ENST00000394536 IL13P35225 146 aa19.52■□□□□ 0.72
PCDH1-203ENST00000394536 EIF4A2Q14240 407 aaKnown RBP19.52■□□□□ 0.72
PCDH1-203ENST00000394536 BCL11BQ9C0K0 894 aaPredicted RBP19.52■□□□□ 0.72
PCDH1-203ENST00000394536 DTNBO60941 627 aa19.52■□□□□ 0.72
PCDH1-203ENST00000394536 AIMP1Q12904 312 aaKnown RBP19.52■□□□□ 0.72
PCDH1-203ENST00000394536 CWC27Q6UX04 472 aaKnown RBP19.52■□□□□ 0.72
PCDH1-203ENST00000394536 TSPY26PQ9H489 355 aa19.52■□□□□ 0.72
PCDH1-203ENST00000394536 LRRFIP2Q9Y608 721 aaKnown RBP19.52■□□□□ 0.72
PCDH1-203ENST00000394536 SRGAP3O43295 1099 aa19.52■□□□□ 0.71
PCDH1-203ENST00000394536 G2E3Q7L622 706 aa19.52■□□□□ 0.71
PCDH1-203ENST00000394536 IFIT2P09913 472 aaKnown RBP19.51■□□□□ 0.71
PCDH1-203ENST00000394536 PDE1AP54750 535 aa19.51■□□□□ 0.71
PCDH1-203ENST00000394536 TMX3Q96JJ7 454 aa19.51■□□□□ 0.71
PCDH1-203ENST00000394536 MADDQ8WXG6 1647 aa19.51■□□□□ 0.71
PCDH1-203ENST00000394536 MCM2P49736 904 aa19.51■□□□□ 0.71
PCDH1-203ENST00000394536 GPATCH3Q96I76 525 aa19.51■□□□□ 0.71
PCDH1-203ENST00000394536 ZRSR1Q15695 479 aaKnown RBP19.5■□□□□ 0.71
PCDH1-203ENST00000394536 ABTB2Q8N961 1025 aa19.5■□□□□ 0.71
PCDH1-203ENST00000394536 USHBP1Q8N6Y0 703 aa19.5■□□□□ 0.71
PCDH1-203ENST00000394536 TPM2P07951 284 aa19.49■□□□□ 0.71
PCDH1-203ENST00000394536 E9PCH4 1651 aa19.49■□□□□ 0.71
PCDH1-203ENST00000394536 PPIP5K1Q6PFW1 1433 aa19.49■□□□□ 0.71
PCDH1-203ENST00000394536 YTHDC2Q9H6S0 1430 aaKnown RBP19.49■□□□□ 0.71
PCDH1-203ENST00000394536 CCDC39Q9UFE4 941 aa19.49■□□□□ 0.71
PCDH1-203ENST00000394536 ATP6V1DQ9Y5K8 247 aa19.49■□□□□ 0.71
PCDH1-203ENST00000394536 HSP90B1P14625 803 aaKnown RBP19.48■□□□□ 0.71
PCDH1-203ENST00000394536 ZKSCAN1P17029 563 aaPredicted RBP19.48■□□□□ 0.71
PCDH1-203ENST00000394536 FLIIQ13045 1269 aa19.48■□□□□ 0.71
PCDH1-203ENST00000394536 PLXNC1O60486 1568 aa19.48■□□□□ 0.71
PCDH1-203ENST00000394536 RRP9O43818 475 aaKnown RBP19.48■□□□□ 0.71
PCDH1-203ENST00000394536 ACEP12821 1306 aa19.47■□□□□ 0.71
PCDH1-203ENST00000394536 ANXA1P04083 346 aa19.46■□□□□ 0.71
PCDH1-203ENST00000394536 FOSBP53539 338 aa19.46■□□□□ 0.71
PCDH1-203ENST00000394536 CLASRPQ8N2M8 674 aaKnown RBP19.46■□□□□ 0.71
PCDH1-203ENST00000394536 SRCIN1Q9C0H9 1055 aa19.46■□□□□ 0.71
PCDH1-203ENST00000394536 CNTROBQ8N137 903 aa19.46■□□□□ 0.71
PCDH1-203ENST00000394536 RUFY2Q8WXA3 655 aa19.46■□□□□ 0.71
PCDH1-203ENST00000394536 CSPP1Q1MSJ5 1256 aa19.46■□□□□ 0.71
PCDH1-203ENST00000394536 MYOM2P54296 1465 aa19.45■□□□□ 0.7
PCDH1-203ENST00000394536 SPC24Q8NBT2 197 aa19.45■□□□□ 0.7
PCDH1-203ENST00000394536 RBSNQ9H1K0 784 aa19.45■□□□□ 0.7
PCDH1-203ENST00000394536 SPG7Q9UQ90 795 aa19.45■□□□□ 0.7
PCDH1-203ENST00000394536 UQCRHLA0A096LP55 91 aa19.45■□□□□ 0.7
PCDH1-203ENST00000394536 UQCRHP07919 91 aa19.45■□□□□ 0.7
PCDH1-203ENST00000394536 NCBP3Q53F19 620 aaKnown RBP19.45■□□□□ 0.7
PCDH1-203ENST00000394536 PTPRCP08575 1304 aa19.44■□□□□ 0.7
PCDH1-203ENST00000394536 WDR33Q9C0J8 1336 aaKnown RBP19.44■□□□□ 0.7
PCDH1-203ENST00000394536 ZFYVE16Q7Z3T8 1539 aa19.44■□□□□ 0.7
PCDH1-203ENST00000394536 FERMT3Q86UX7 667 aa19.44■□□□□ 0.7
PCDH1-203ENST00000394536 ZNF330Q9Y3S2 320 aaPredicted RBP19.44■□□□□ 0.7
PCDH1-203ENST00000394536 MTHFSDQ2M296 383 aaKnown RBP19.43■□□□□ 0.7
PCDH1-203ENST00000394536 RBM33Q96EV2 1170 aaKnown RBP19.43■□□□□ 0.7
PCDH1-203ENST00000394536 A0A0G2JS52 829 aa19.43■□□□□ 0.7
PCDH1-203ENST00000394536 SIL1Q9H173 461 aa19.43■□□□□ 0.7
PCDH1-203ENST00000394536 USP25Q9UHP3 1055 aa19.42■□□□□ 0.7
PCDH1-203ENST00000394536 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.42■□□□□ 0.7
PCDH1-203ENST00000394536 MSH6P52701 1360 aa19.42■□□□□ 0.7
PCDH1-203ENST00000394536 ZNF830Q96NB3 372 aaPredicted RBP19.42■□□□□ 0.7
PCDH1-203ENST00000394536 ABCC4O15439 1325 aa19.42■□□□□ 0.7
PCDH1-203ENST00000394536 GNAT3A8MTJ3 354 aa19.42■□□□□ 0.7
PCDH1-203ENST00000394536 G3BP1Q13283 466 aaKnown RBP eCLIP19.42■□□□□ 0.7
PCDH1-203ENST00000394536 C1orf141Q5JVX7 400 aa19.42■□□□□ 0.7
PCDH1-203ENST00000394536 ESYT1Q9BSJ8 1104 aa19.42■□□□□ 0.7
PCDH1-203ENST00000394536 ZMYM3Q14202 1370 aa19.41■□□□□ 0.7
PCDH1-203ENST00000394536 TAF7Q15545 349 aaPredicted RBP19.41■□□□□ 0.7
PCDH1-203ENST00000394536 TTC21BQ7Z4L5 1316 aa19.41■□□□□ 0.7
PCDH1-203ENST00000394536 CASTP20810 708 aaKnown RBP19.41■□□□□ 0.7
PCDH1-203ENST00000394536 STK3Q13188 491 aa19.41■□□□□ 0.7
PCDH1-203ENST00000394536 CCDC83Q8IWF9 413 aa19.41■□□□□ 0.7
PCDH1-203ENST00000394536 FBXW7Q969H0 707 aa19.41■□□□□ 0.7
PCDH1-203ENST00000394536 JAKMIP1Q96N16 626 aaKnown RBP19.41■□□□□ 0.7
PCDH1-203ENST00000394536 MAP3K4Q9Y6R4 1608 aa19.4■□□□□ 0.7
PCDH1-203ENST00000394536 LMBRD1Q9NUN5 540 aa19.4■□□□□ 0.7
PCDH1-203ENST00000394536 H3BQV1 296 aa19.4■□□□□ 0.7
PCDH1-203ENST00000394536 IFFO2Q5TF58 517 aa19.4■□□□□ 0.7
PCDH1-203ENST00000394536 CLASP1Q7Z460 1538 aa19.4■□□□□ 0.7
PCDH1-203ENST00000394536 PPP1R42Q7Z4L9 355 aa19.4■□□□□ 0.7
PCDH1-203ENST00000394536 BICD2Q8TD16 824 aa19.4■□□□□ 0.7
PCDH1-203ENST00000394536 CSB-PGBD3P0DP91 1061 aa19.39■□□□□ 0.7
PCDH1-203ENST00000394536 CEBPAP49715 358 aaPredicted RBP19.39■□□□□ 0.7
PCDH1-203ENST00000394536 PSME1Q06323 249 aa19.39■□□□□ 0.7
PCDH1-203ENST00000394536 GOLGA6L6A8MZA4 724 aa19.39■□□□□ 0.69
PCDH1-203ENST00000394536 CHL1O00533 1208 aa19.39■□□□□ 0.69
PCDH1-203ENST00000394536 ERBB4Q15303 1308 aa19.39■□□□□ 0.69
PCDH1-203ENST00000394536 LAMC1P11047 1609 aa19.39■□□□□ 0.69
PCDH1-203ENST00000394536 HSP90AB4PQ58FF6 505 aa19.38■□□□□ 0.69
PCDH1-203ENST00000394536 KIF2CQ99661 725 aa19.38■□□□□ 0.69
PCDH1-203ENST00000394536 CHMP4AQ9BY43 222 aa19.38■□□□□ 0.69
PCDH1-203ENST00000394536 LRSAM1Q6UWE0 723 aa19.38■□□□□ 0.69
PCDH1-203ENST00000394536 RIMS2Q9UQ26 1411 aa19.38■□□□□ 0.69
PCDH1-203ENST00000394536 ZCCHC11Q5TAX3 1644 aaKnown RBP19.37■□□□□ 0.69
PCDH1-203ENST00000394536 PRPF40BQ6NWY9 871 aaKnown RBP19.37■□□□□ 0.69
PCDH1-203ENST00000394536 FSD1Q9BTV5 496 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms