RNA–Protein interactions for RNA: ENST00000394082.8

SNRPA1-202, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-202ENST00000394082 SHANK3Q9BYB0 1731 aa24.43■■□□□ 1.5
SNRPA1-202ENST00000394082 SMG6Q86US8 1419 aaKnown RBP24.43■■□□□ 1.5
SNRPA1-202ENST00000394082 MAP3K5Q99683 1374 aa24.42■■□□□ 1.5
SNRPA1-202ENST00000394082 ZNF827Q17R98 1081 aa24.42■■□□□ 1.5
SNRPA1-202ENST00000394082 SYT17Q9BSW7 474 aa24.42■■□□□ 1.5
SNRPA1-202ENST00000394082 RGPD2P0DJD1 1756 aa24.42■■□□□ 1.5
SNRPA1-202ENST00000394082 INSRP06213 1382 aa24.42■■□□□ 1.5
SNRPA1-202ENST00000394082 PRIM1P49642 420 aaKnown RBP24.41■■□□□ 1.5
SNRPA1-202ENST00000394082 RRS1Q15050 365 aaKnown RBP24.41■■□□□ 1.5
SNRPA1-202ENST00000394082 NBPF6Q5VWK0 638 aa24.41■■□□□ 1.5
SNRPA1-202ENST00000394082 NBPF4Q96M43 638 aa24.41■■□□□ 1.5
SNRPA1-202ENST00000394082 FHDC1Q9C0D6 1143 aaPredicted RBP24.41■■□□□ 1.5
SNRPA1-202ENST00000394082 UTRNP46939 3433 aa24.41■■□□□ 1.5
SNRPA1-202ENST00000394082 NSD2O96028 1365 aa24.4■■□□□ 1.5
SNRPA1-202ENST00000394082 CLSPNQ9HAW4 1339 aa24.39■■□□□ 1.5
SNRPA1-202ENST00000394082 LY75O60449 1722 aa24.39■■□□□ 1.5
SNRPA1-202ENST00000394082 DOT1LQ8TEK3 1739 aa24.39■■□□□ 1.5
SNRPA1-202ENST00000394082 ARXQ96QS3 562 aa24.39■■□□□ 1.49
SNRPA1-202ENST00000394082 KIF20BQ96Q89 1820 aa24.39■■□□□ 1.49
SNRPA1-202ENST00000394082 FLT4P35916 1363 aa24.39■■□□□ 1.49
SNRPA1-202ENST00000394082 RAPGEF4Q8WZA2 1011 aa24.37■■□□□ 1.49
SNRPA1-202ENST00000394082 SYTL4Q96C24 671 aaPredicted RBP24.37■■□□□ 1.49
SNRPA1-202ENST00000394082 COL24A1Q17RW2 1714 aa24.36■■□□□ 1.49
SNRPA1-202ENST00000394082 HMGB2P26583 209 aaKnown RBP24.36■■□□□ 1.49
SNRPA1-202ENST00000394082 HSP90AB2PQ58FF8 381 aa24.35■■□□□ 1.49
SNRPA1-202ENST00000394082 CARD14Q9BXL6 1004 aa24.34■■□□□ 1.49
SNRPA1-202ENST00000394082 PNPLA7Q6ZV29 1317 aa24.34■■□□□ 1.49
SNRPA1-202ENST00000394082 TATP17735 454 aaPredicted RBP24.33■■□□□ 1.49
SNRPA1-202ENST00000394082 PCDH11XQ9BZA7 1347 aa24.33■■□□□ 1.48
SNRPA1-202ENST00000394082 PCDH11YQ9BZA8 1340 aa24.33■■□□□ 1.48
SNRPA1-202ENST00000394082 TFCP2L1Q9NZI6 479 aa24.32■■□□□ 1.48
SNRPA1-202ENST00000394082 NCAPD2Q15021 1401 aa24.3■■□□□ 1.48
SNRPA1-202ENST00000394082 NSD3Q9BZ95 1437 aa24.3■■□□□ 1.48
SNRPA1-202ENST00000394082 USHBP1Q8N6Y0 703 aa24.3■■□□□ 1.48
SNRPA1-202ENST00000394082 CCNL1Q9UK58 526 aaPredicted RBP24.3■■□□□ 1.48
SNRPA1-202ENST00000394082 POLD1P28340 1107 aa24.29■■□□□ 1.48
SNRPA1-202ENST00000394082 ANKRD26Q9UPS8 1709 aa24.28■■□□□ 1.48
SNRPA1-202ENST00000394082 TUBGCP6Q96RT7 1819 aa24.28■■□□□ 1.48
SNRPA1-202ENST00000394082 KCNQ4P56696 695 aa24.26■■□□□ 1.47
SNRPA1-202ENST00000394082 WASHC2AQ641Q2 1341 aa24.26■■□□□ 1.47
SNRPA1-202ENST00000394082 EMILIN1Q9Y6C2 1016 aa24.25■■□□□ 1.47
SNRPA1-202ENST00000394082 PKD1L3Q7Z443 1732 aa24.24■■□□□ 1.47
SNRPA1-202ENST00000394082 CHD4Q14839 1912 aa24.24■■□□□ 1.47
SNRPA1-202ENST00000394082 CYP27B1O15528 508 aa24.24■■□□□ 1.47
SNRPA1-202ENST00000394082 NKX1-1Q15270 411 aaPredicted RBP24.23■■□□□ 1.47
SNRPA1-202ENST00000394082 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.23■■□□□ 1.47
SNRPA1-202ENST00000394082 GOLGB1Q14789 3259 aaKnown RBP24.22■■□□□ 1.47
SNRPA1-202ENST00000394082 PLEKHG2Q9H7P9 1386 aa24.22■■□□□ 1.47
SNRPA1-202ENST00000394082 FLAD1Q8NFF5 587 aa24.21■■□□□ 1.47
SNRPA1-202ENST00000394082 SMARCC1Q92922 1105 aaPredicted RBP24.21■■□□□ 1.47
SNRPA1-202ENST00000394082 PALLDQ8WX93 1383 aa24.2■■□□□ 1.46
SNRPA1-202ENST00000394082 ZNF784Q8NCA9 323 aaPredicted RBP24.2■■□□□ 1.46
SNRPA1-202ENST00000394082 C5P01031 1676 aa24.2■■□□□ 1.46
SNRPA1-202ENST00000394082 COL23A1Q86Y22 540 aaPredicted RBP24.19■■□□□ 1.46
SNRPA1-202ENST00000394082 SPG7Q9UQ90 795 aa24.19■■□□□ 1.46
SNRPA1-202ENST00000394082 MPRIPQ6WCQ1 1025 aa24.18■■□□□ 1.46
SNRPA1-202ENST00000394082 POLKQ9UBT6 870 aa24.18■■□□□ 1.46
SNRPA1-202ENST00000394082 MAP2P11137 1827 aaKnown RBP24.18■■□□□ 1.46
SNRPA1-202ENST00000394082 TAF1LQ8IZX4 1826 aa24.17■■□□□ 1.46
SNRPA1-202ENST00000394082 TOGARAM1Q9Y4F4 1720 aa24.17■■□□□ 1.46
SNRPA1-202ENST00000394082 ITGB4P16144 1822 aa24.17■■□□□ 1.46
SNRPA1-202ENST00000394082 PPM1GO15355 546 aaPredicted RBP24.16■■□□□ 1.46
SNRPA1-202ENST00000394082 GPR162Q16538 588 aa24.16■■□□□ 1.46
SNRPA1-202ENST00000394082 EYA1Q99502 592 aa24.16■■□□□ 1.46
SNRPA1-202ENST00000394082 PIGBQ92521 554 aa24.13■■□□□ 1.45
SNRPA1-202ENST00000394082 MSH5O43196 834 aa24.12■■□□□ 1.45
SNRPA1-202ENST00000394082 EIF4G2P78344 907 aaKnown RBP eCLIP24.12■■□□□ 1.45
SNRPA1-202ENST00000394082 C4BP0C0L5 1744 aa24.12■■□□□ 1.45
SNRPA1-202ENST00000394082 IFNL2Q8IZJ0 200 aa24.11■■□□□ 1.45
SNRPA1-202ENST00000394082 KLHL34Q8N239 644 aa24.11■■□□□ 1.45
SNRPA1-202ENST00000394082 PCGF6Q9BYE7 350 aa24.11■■□□□ 1.45
SNRPA1-202ENST00000394082 NLGN2Q8NFZ4 835 aa24.1■■□□□ 1.45
SNRPA1-202ENST00000394082 PHKG2P15735 406 aa24.09■■□□□ 1.45
SNRPA1-202ENST00000394082 CD2APQ9Y5K6 639 aa24.09■■□□□ 1.45
SNRPA1-202ENST00000394082 GRIN3BO60391 1043 aa24.08■■□□□ 1.45
SNRPA1-202ENST00000394082 EIF4A2Q14240 407 aaKnown RBP24.08■■□□□ 1.45
SNRPA1-202ENST00000394082 AK7Q96M32 723 aa24.08■■□□□ 1.45
SNRPA1-202ENST00000394082 LOC102724428A0A0B4J2F2 783 aa24.07■■□□□ 1.44
SNRPA1-202ENST00000394082 SIK1P57059 783 aa24.07■■□□□ 1.44
SNRPA1-202ENST00000394082 TMOD3Q9NYL9 352 aa24.07■■□□□ 1.44
SNRPA1-202ENST00000394082 IGSF1Q8N6C5 1336 aa24.07■■□□□ 1.44
SNRPA1-202ENST00000394082 SSFA2P28290 1259 aa24.06■■□□□ 1.44
SNRPA1-202ENST00000394082 UBR3Q6ZT12 1888 aa24.06■■□□□ 1.44
SNRPA1-202ENST00000394082 HSPA5P11021 654 aaKnown RBP24.04■■□□□ 1.44
SNRPA1-202ENST00000394082 MSL1Q68DK7 614 aa24.04■■□□□ 1.44
SNRPA1-202ENST00000394082 PANK3Q9H999 370 aa24.04■■□□□ 1.44
SNRPA1-202ENST00000394082 POLR3GLQ9BT43 218 aa24.03■■□□□ 1.44
SNRPA1-202ENST00000394082 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.02■■□□□ 1.44
SNRPA1-202ENST00000394082 HSP90AB1P08238 724 aaKnown RBP24.02■■□□□ 1.44
SNRPA1-202ENST00000394082 ASAP1Q9ULH1 1129 aa24.02■■□□□ 1.44
SNRPA1-202ENST00000394082 ERVV-2B6SEH9 535 aa24.01■■□□□ 1.43
SNRPA1-202ENST00000394082 YBX3P16989 372 aaKnown RBP eCLIP24.01■■□□□ 1.43
SNRPA1-202ENST00000394082 TNNT2P45379 298 aaPredicted RBP24.01■■□□□ 1.43
SNRPA1-202ENST00000394082 AMIGO3Q86WK7 504 aa24.01■■□□□ 1.43
SNRPA1-202ENST00000394082 PELP1Q8IZL8 1130 aaKnown RBP24.01■■□□□ 1.43
SNRPA1-202ENST00000394082 LINC00116Q8NCU8 138 aa24.01■■□□□ 1.43
SNRPA1-202ENST00000394082 ZNF831Q5JPB2 1677 aa24.01■■□□□ 1.43
SNRPA1-202ENST00000394082 DCAF5Q96JK2 942 aa24■■□□□ 1.43
SNRPA1-202ENST00000394082 ATG3Q9NT62 314 aa24■■□□□ 1.43
SNRPA1-202ENST00000394082 AMOTQ4VCS5 1084 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms