RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 KIF21BO75037 1637 aa15□□□□□ -0.01
CCDC88C-204ENST00000389857 WDR63Q8IWG1 891 aa14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 IGHMBP2P38935 993 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 SEC63Q9UGP8 760 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 PPP4R3AQ6IN85 833 aa14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 RAI14Q9P0K7 980 aa14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 IMMTQ16891 758 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 ZNF530Q6P9A1 599 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 PRAM1Q96QH2 718 aa14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 DDX54Q8TDD1 881 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-204ENST00000389857 LRP2BPQ9P2M1 347 aa14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 SULT6B1Q6IMI4 303 aa14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 TMOD2Q9NZR1 351 aa14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 BTBD11A6QL63 1104 aa14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 ANAPC15P60006 121 aa14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 CHD1LQ86WJ1 897 aa14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 JAKMIP1Q96N16 626 aaKnown RBP14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 TSG101Q99816 390 aa14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 GBP3Q9H0R5 595 aa14.98□□□□□ -0.01
CCDC88C-204ENST00000389857 CEP126Q9P2H0 1117 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 ATAD2BQ9ULI0 1458 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 CDK19Q9BWU1 502 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 CCDC102AQ96A19 550 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 GRPEL1Q9HAV7 217 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 STAMBPO95630 424 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 MCM3P25205 808 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 USP5P45974 858 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 FGD5Q6ZNL6 1462 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 LRRC9Q6ZRR7 1453 aa14.97□□□□□ -0.01
CCDC88C-204ENST00000389857 RBM10P98175 930 aaKnown RBP14.96□□□□□ -0.01
CCDC88C-204ENST00000389857 ARHGAP29Q52LW3 1261 aa14.96□□□□□ -0.01
CCDC88C-204ENST00000389857 SPA17Q15506 151 aa14.96□□□□□ -0.01
CCDC88C-204ENST00000389857 MAP2K1Q02750 393 aaPredicted RBP14.96□□□□□ -0.02
CCDC88C-204ENST00000389857 AIDAQ96BJ3 306 aa14.96□□□□□ -0.02
CCDC88C-204ENST00000389857 MVPQ14764 893 aaKnown RBP14.96□□□□□ -0.02
CCDC88C-204ENST00000389857 CWC27Q6UX04 472 aaKnown RBP14.96□□□□□ -0.02
CCDC88C-204ENST00000389857 UQCRHLA0A096LP55 91 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 UQCRHP07919 91 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 CCDC150Q8NCX0 1101 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 SRGAP3O43295 1099 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 ATF7IPQ6VMQ6 1270 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 THEMISQ8N1K5 641 aaPredicted RBP14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 HFM1A2PYH4 1435 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 MAP9Q49MG5 647 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 FKBP15Q5T1M5 1219 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 SYNJ2O15056 1496 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 FGFR1OPO95684 399 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 TSR2Q969E8 191 aaKnown RBP14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 NCOA2Q15596 1464 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 CIZ1Q9ULV3 898 aaPredicted RBP14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 KIF2AO00139 706 aaPredicted RBP14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 DYDC1Q8WWB3 177 aa14.95□□□□□ -0.02
CCDC88C-204ENST00000389857 VPS36Q86VN1 386 aa14.94□□□□□ -0.02
CCDC88C-204ENST00000389857 AKAP2Q9Y2D5 859 aa14.94□□□□□ -0.02
CCDC88C-204ENST00000389857 PLEKHH2Q8IVE3 1493 aa14.94□□□□□ -0.02
CCDC88C-204ENST00000389857 MAP3K11Q16584 847 aa14.94□□□□□ -0.02
CCDC88C-204ENST00000389857 PHAXQ9H814 394 aaKnown RBP14.94□□□□□ -0.02
CCDC88C-204ENST00000389857 RTEL1-TNFRSF6BF6WH68 1400 aa14.94□□□□□ -0.02
CCDC88C-204ENST00000389857 CRACR2AQ9BSW2 395 aa14.94□□□□□ -0.02
CCDC88C-204ENST00000389857 ZNF652Q9Y2D9 606 aa14.94□□□□□ -0.02
CCDC88C-204ENST00000389857 CDCA7LQ96GN5 454 aa14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 ZSCAN12O43309 604 aa14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 CFAP100Q494V2 611 aa14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 NUTM2BA6NNL0 878 aaPredicted RBP14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 NUTM2EB1AL46 878 aaPredicted RBP14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 STARD3NLO95772 234 aa14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 NUTM2AQ8IVF1 878 aaPredicted RBP14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 U3KPZ7 1027 aaPredicted RBP14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 CASQ1P31415 396 aa14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 CFAP70Q5T0N1 1121 aa14.93□□□□□ -0.02
CCDC88C-204ENST00000389857 SHTN1A0MZ66 631 aa14.92□□□□□ -0.02
CCDC88C-204ENST00000389857 GOLGA6L10A0A0M3HER8 536 aa14.92□□□□□ -0.02
CCDC88C-204ENST00000389857 CASTP20810 708 aaKnown RBP14.92□□□□□ -0.02
CCDC88C-204ENST00000389857 ZNF644Q9H582 1327 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-204ENST00000389857 WDHD1O75717 1129 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-204ENST00000389857 EHMT1Q9H9B1 1298 aa14.92□□□□□ -0.02
CCDC88C-204ENST00000389857 PDCL2Q8N4E4 241 aa14.92□□□□□ -0.02
CCDC88C-204ENST00000389857 RAB11FIP3O75154 756 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 SCLT1Q96NL6 688 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 CASKIN1Q8WXD9 1431 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 GCOM1H8Y6P7 765 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 BCAR3O75815 825 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 MYZAPP0CAP1 466 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 RAB34Q9BZG1 259 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 IDH1O75874 414 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 CAVIN4Q5BKX8 364 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 CCDC196A0A1B0GTZ2 297 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 TAF3Q5VWG9 929 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 UBXN4Q92575 508 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 RUSC2Q8N2Y8 1516 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 KIF5CO60282 957 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 PIBF1Q8WXW3 757 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 ZNF428Q96B54 188 aa14.91□□□□□ -0.02
CCDC88C-204ENST00000389857 NF2P35240 595 aa14.9□□□□□ -0.02
CCDC88C-204ENST00000389857 CACNA2D4Q7Z3S7 1137 aa14.9□□□□□ -0.02
CCDC88C-204ENST00000389857 ERICH3Q5RHP9 1530 aa14.9□□□□□ -0.02
CCDC88C-204ENST00000389857 POLR3DP05423 398 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-204ENST00000389857 CUL5Q93034 780 aa14.9□□□□□ -0.02
CCDC88C-204ENST00000389857 ANKRD30BQ9BXX2 1392 aa14.9□□□□□ -0.02
CCDC88C-204ENST00000389857 METTL24Q5JXM2 366 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms