RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 DDB1Q16531 1140 aa13.49□□□□□ -0.25
VPS53-202ENST00000389040 PNNQ9H307 717 aaKnown RBP13.49□□□□□ -0.25
VPS53-202ENST00000389040 TATP17735 454 aaPredicted RBP13.49□□□□□ -0.25
VPS53-202ENST00000389040 PDE3BQ13370 1112 aa13.48□□□□□ -0.25
VPS53-202ENST00000389040 KRT27Q7Z3Y8 459 aa13.48□□□□□ -0.25
VPS53-202ENST00000389040 COL3A1P02461 1466 aaPredicted RBP13.48□□□□□ -0.25
VPS53-202ENST00000389040 A0A0G2JS52 829 aa13.47□□□□□ -0.25
VPS53-202ENST00000389040 FCHSD2O94868 740 aa13.47□□□□□ -0.25
VPS53-202ENST00000389040 MYT1Q01538 1121 aa13.47□□□□□ -0.25
VPS53-202ENST00000389040 AMOTQ4VCS5 1084 aa13.47□□□□□ -0.25
VPS53-202ENST00000389040 RGS12O14924 1447 aa13.47□□□□□ -0.25
VPS53-202ENST00000389040 ZBTB22O15209 634 aa13.47□□□□□ -0.25
VPS53-202ENST00000389040 SPG7Q9UQ90 795 aa13.47□□□□□ -0.25
VPS53-202ENST00000389040 RGPD5Q99666 1765 aa13.46□□□□□ -0.25
VPS53-202ENST00000389040 SULT6B1Q6IMI4 303 aa13.46□□□□□ -0.25
VPS53-202ENST00000389040 ZCRB1Q8TBF4 217 aaKnown RBP13.46□□□□□ -0.25
VPS53-202ENST00000389040 OVOS2A0A0G2JMS6 1433 aa13.46□□□□□ -0.25
VPS53-202ENST00000389040 THSD7AQ9UPZ6 1657 aa13.46□□□□□ -0.26
VPS53-202ENST00000389040 BCL9O00512 1426 aa13.45□□□□□ -0.26
VPS53-202ENST00000389040 U2SURPO15042 1029 aaKnown RBP13.45□□□□□ -0.26
VPS53-202ENST00000389040 PLEKHO1Q53GL0 409 aaPredicted RBP13.45□□□□□ -0.26
VPS53-202ENST00000389040 FAM196AQ6ZSG2 479 aa13.45□□□□□ -0.26
VPS53-202ENST00000389040 TNS2Q63HR2 1409 aa13.44□□□□□ -0.26
VPS53-202ENST00000389040 USHBP1Q8N6Y0 703 aa13.44□□□□□ -0.26
VPS53-202ENST00000389040 U2AF1L5P0DN76 240 aaPredicted RBP13.43□□□□□ -0.26
VPS53-202ENST00000389040 U2AF1Q01081 240 aaKnown RBP eCLIP13.43□□□□□ -0.26
VPS53-202ENST00000389040 PCDH11XQ9BZA7 1347 aa13.43□□□□□ -0.26
VPS53-202ENST00000389040 PCDH11YQ9BZA8 1340 aa13.43□□□□□ -0.26
VPS53-202ENST00000389040 NEFMP07197 916 aa13.43□□□□□ -0.26
VPS53-202ENST00000389040 CCDC125Q86Z20 511 aa13.43□□□□□ -0.26
VPS53-202ENST00000389040 PARP4Q9UKK3 1724 aaKnown RBP13.42□□□□□ -0.26
VPS53-202ENST00000389040 RGPD1P0DJD0 1748 aa13.41□□□□□ -0.26
VPS53-202ENST00000389040 HSP90AB1P08238 724 aaKnown RBP13.41□□□□□ -0.26
VPS53-202ENST00000389040 WDR43Q15061 677 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS53-202ENST00000389040 RSPH6AQ9H0K4 717 aa13.41□□□□□ -0.26
VPS53-202ENST00000389040 MEGF6O75095 1541 aa13.41□□□□□ -0.26
VPS53-202ENST00000389040 NKX1-1Q15270 411 aaPredicted RBP13.41□□□□□ -0.26
VPS53-202ENST00000389040 ERICH6BQ5W0A0 696 aa13.41□□□□□ -0.26
VPS53-202ENST00000389040 AEBP1Q8IUX7 1158 aa13.41□□□□□ -0.26
VPS53-202ENST00000389040 IFNL2Q8IZJ0 200 aa13.41□□□□□ -0.26
VPS53-202ENST00000389040 HMOX1P09601 288 aa13.4□□□□□ -0.26
VPS53-202ENST00000389040 IRX6P78412 446 aaPredicted RBP13.4□□□□□ -0.26
VPS53-202ENST00000389040 ILDR2Q71H61 639 aa13.4□□□□□ -0.26
VPS53-202ENST00000389040 MARCH10Q8NA82 808 aaPredicted RBP13.4□□□□□ -0.26
VPS53-202ENST00000389040 GAS2L2Q8NHY3 880 aa13.4□□□□□ -0.26
VPS53-202ENST00000389040 DDX54Q8TDD1 881 aaKnown RBP13.39□□□□□ -0.27
VPS53-202ENST00000389040 SENP3-EIF4A1A0A087X0R7 540 aa13.38□□□□□ -0.27
VPS53-202ENST00000389040 C1orf141Q5JVX7 400 aa13.38□□□□□ -0.27
VPS53-202ENST00000389040 CYP27B1O15528 508 aa13.37□□□□□ -0.27
VPS53-202ENST00000389040 PRKAR2BP31323 418 aa13.37□□□□□ -0.27
VPS53-202ENST00000389040 AKAP4Q5JQC9 854 aa13.37□□□□□ -0.27
VPS53-202ENST00000389040 LRRC37A3O60309 1634 aa13.37□□□□□ -0.27
VPS53-202ENST00000389040 PHKG2P15735 406 aa13.37□□□□□ -0.27
VPS53-202ENST00000389040 DCAF5Q96JK2 942 aa13.37□□□□□ -0.27
VPS53-202ENST00000389040 PLEKHF1Q96S99 279 aa13.37□□□□□ -0.27
VPS53-202ENST00000389040 HTATSF1O43719 755 aaKnown RBP13.36□□□□□ -0.27
VPS53-202ENST00000389040 ADAMTS8Q9UP79 889 aa13.36□□□□□ -0.27
VPS53-202ENST00000389040 WNK3Q9BYP7 1800 aa13.36□□□□□ -0.27
VPS53-202ENST00000389040 ZNF530Q6P9A1 599 aaPredicted RBP13.35□□□□□ -0.27
VPS53-202ENST00000389040 BCL11BQ9C0K0 894 aaPredicted RBP13.35□□□□□ -0.27
VPS53-202ENST00000389040 ERVV-2B6SEH9 535 aa13.35□□□□□ -0.27
VPS53-202ENST00000389040 HMGB2P26583 209 aaKnown RBP13.35□□□□□ -0.27
VPS53-202ENST00000389040 MTHFSDQ2M296 383 aaKnown RBP13.35□□□□□ -0.27
VPS53-202ENST00000389040 RUNDC1Q96C34 613 aa13.35□□□□□ -0.27
VPS53-202ENST00000389040 MAPK8IP3Q9UPT6 1336 aa13.35□□□□□ -0.27
VPS53-202ENST00000389040 RGPD2P0DJD1 1756 aa13.35□□□□□ -0.27
VPS53-202ENST00000389040 PKD1L3Q7Z443 1732 aa13.34□□□□□ -0.27
VPS53-202ENST00000389040 RNF123Q5XPI4 1314 aa13.33□□□□□ -0.28
VPS53-202ENST00000389040 GNAT3A8MTJ3 354 aa13.33□□□□□ -0.28
VPS53-202ENST00000389040 SF3B2Q13435 895 aaKnown RBP13.33□□□□□ -0.28
VPS53-202ENST00000389040 PHACTR3Q96KR7 559 aa13.33□□□□□ -0.28
VPS53-202ENST00000389040 NGEFQ8N5V2 710 aa13.33□□□□□ -0.28
VPS53-202ENST00000389040 PPP4R2Q9NY27 417 aa13.32□□□□□ -0.28
VPS53-202ENST00000389040 SOCS7O14512 581 aa13.31□□□□□ -0.28
VPS53-202ENST00000389040 LMOD3Q0VAK6 560 aa13.31□□□□□ -0.28
VPS53-202ENST00000389040 NFE2L2Q16236 605 aa13.31□□□□□ -0.28
VPS53-202ENST00000389040 UPF1Q92900 1129 aaKnown RBP eCLIP13.31□□□□□ -0.28
VPS53-202ENST00000389040 PLSCR1O15162 318 aa13.31□□□□□ -0.28
VPS53-202ENST00000389040 RTF1Q92541 710 aaKnown RBP13.31□□□□□ -0.28
VPS53-202ENST00000389040 TSHZ2Q9NRE2 1034 aa13.31□□□□□ -0.28
VPS53-202ENST00000389040 SALL2Q9Y467 1007 aaPredicted RBP13.31□□□□□ -0.28
VPS53-202ENST00000389040 MAP3K5Q99683 1374 aa13.3□□□□□ -0.28
VPS53-202ENST00000389040 FAM182BQ5T319 152 aa13.3□□□□□ -0.28
VPS53-202ENST00000389040 CNKSR2Q8WXI2 1034 aa13.3□□□□□ -0.28
VPS53-202ENST00000389040 BRWD3Q6RI45 1802 aa13.3□□□□□ -0.28
VPS53-202ENST00000389040 TRIM37O94972 964 aa13.29□□□□□ -0.28
VPS53-202ENST00000389040 PRIM1P49642 420 aaKnown RBP13.29□□□□□ -0.28
VPS53-202ENST00000389040 RNMTO43148 476 aaKnown RBP13.28□□□□□ -0.28
VPS53-202ENST00000389040 TMPOP42166 694 aaKnown RBP13.28□□□□□ -0.28
VPS53-202ENST00000389040 BAG6P46379 1132 aa13.28□□□□□ -0.28
VPS53-202ENST00000389040 CABP4P57796 275 aa13.28□□□□□ -0.28
VPS53-202ENST00000389040 SMARCC1Q92922 1105 aaPredicted RBP13.28□□□□□ -0.28
VPS53-202ENST00000389040 TMOD3Q9NYL9 352 aa13.28□□□□□ -0.28
VPS53-202ENST00000389040 EP400Q96L91 3159 aa13.28□□□□□ -0.28
VPS53-202ENST00000389040 MPRIPQ6WCQ1 1025 aa13.27□□□□□ -0.28
VPS53-202ENST00000389040 CEMIPQ8WUJ3 1361 aa13.27□□□□□ -0.28
VPS53-202ENST00000389040 APBA3O96018 575 aa13.27□□□□□ -0.29
VPS53-202ENST00000389040 RIPK4P57078 832 aa13.27□□□□□ -0.29
VPS53-202ENST00000389040 SYTL4Q96C24 671 aaPredicted RBP13.27□□□□□ -0.29
VPS53-202ENST00000389040 SLC52A2Q9HAB3 445 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms