RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 FSHRP23945 695 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 TXNRD3Q86VQ6 643 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 RNF135Q8IUD6 432 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 ZDHHC13Q8IUH4 622 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 CCDC116Q8IYX3 515 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 AGBL1Q96MI9 1066 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 GAS2L1Q99501 681 aaPredicted RBP2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 TMPRSS5Q9H3S3 457 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 ADAMTS4O75173 837 aa2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 BMP4P12644 408 aa2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 RHOQP17081 205 aa2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 TRIM28Q13263 835 aaKnown RBP2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 ADGRE1Q14246 886 aa2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 PRICKLE2Q7Z3G6 844 aa2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 SLC51AQ86UW1 340 aa2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 ZNF395Q9H8N7 513 aaPredicted RBP2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 PGPEP1Q9NXJ5 209 aa2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 PHF24Q9UPV7 400 aa2.34□□□□□ -2.03
RNU6-540P-201ENST00000384622 OVOL3O00110 214 aa2.33□□□□□ -2.04
RNU6-540P-201ENST00000384622 OATP04181 439 aa2.33□□□□□ -2.04
RNU6-540P-201ENST00000384622 MBTPS1Q14703 1052 aa2.33□□□□□ -2.04
RNU6-540P-201ENST00000384622 HS6ST3Q8IZP7 471 aa2.33□□□□□ -2.04
RNU6-540P-201ENST00000384622 NUCKS1Q9H1E3 243 aaKnown RBP2.33□□□□□ -2.04
RNU6-540P-201ENST00000384622 EVA1BQ9NVM1 165 aa2.33□□□□□ -2.04
RNU6-540P-201ENST00000384622 DAXXQ9UER7 740 aaPredicted RBP2.33□□□□□ -2.04
RNU6-540P-201ENST00000384622 NEURL1BA8MQ27 555 aa2.32□□□□□ -2.04
RNU6-540P-201ENST00000384622 WNT11O96014 354 aa2.32□□□□□ -2.04
RNU6-540P-201ENST00000384622 AGERQ15109 404 aa2.32□□□□□ -2.04
RNU6-540P-201ENST00000384622 FOXD4L5Q5VV16 416 aaPredicted RBP2.32□□□□□ -2.04
RNU6-540P-201ENST00000384622 PXYLP1Q8TE99 480 aa2.32□□□□□ -2.04
RNU6-540P-201ENST00000384622 MS4A1P11836 297 aa2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 NRG1Q02297 640 aaPredicted RBP2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 KCNH2Q12809 1159 aa2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 NKX1-1Q15270 411 aaPredicted RBP2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 VASH1Q7L8A9 365 aaPredicted RBP2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 SULF1Q8IWU6 871 aa2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 FOXJ1Q92949 421 aa2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 RAPGEFL1Q9UHV5 662 aa2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 KDM2AQ9Y2K7 1162 aa2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 DYRK1BQ9Y463 629 aa2.31□□□□□ -2.04
RNU6-540P-201ENST00000384622 C2CD2LO14523 706 aa2.3□□□□□ -2.04
RNU6-540P-201ENST00000384622 PTGDRQ13258 359 aa2.3□□□□□ -2.04
RNU6-540P-201ENST00000384622 PPP1R26Q5T8A7 1209 aaPredicted RBP2.3□□□□□ -2.04
RNU6-540P-201ENST00000384622 TTLL10Q6ZVT0 673 aa2.3□□□□□ -2.04
RNU6-540P-201ENST00000384622 PAXIP1Q6ZW49 1069 aaPredicted RBP2.3□□□□□ -2.04
RNU6-540P-201ENST00000384622 ARAFP10398 606 aa2.29□□□□□ -2.04
RNU6-540P-201ENST00000384622 FSTP19883 344 aa2.29□□□□□ -2.04
RNU6-540P-201ENST00000384622 CTSWP56202 376 aa2.29□□□□□ -2.04
RNU6-540P-201ENST00000384622 SSBP4Q9BWG4 385 aaPredicted RBP2.29□□□□□ -2.04
RNU6-540P-201ENST00000384622 FARP2O94887 1054 aaPredicted RBP2.28□□□□□ -2.04
RNU6-540P-201ENST00000384622 KSR1Q8IVT5 923 aa2.28□□□□□ -2.04
RNU6-540P-201ENST00000384622 SYMPKQ92797 1274 aaKnown RBP2.28□□□□□ -2.04
RNU6-540P-201ENST00000384622 TGFB1P01137 390 aa2.27□□□□□ -2.05
RNU6-540P-201ENST00000384622 SELPP16109 830 aa2.27□□□□□ -2.05
RNU6-540P-201ENST00000384622 JUNBP17275 347 aaPredicted RBP2.27□□□□□ -2.05
RNU6-540P-201ENST00000384622 PTPRNQ16849 979 aa2.27□□□□□ -2.05
RNU6-540P-201ENST00000384622 PRR23CQ6ZRP0 262 aa2.27□□□□□ -2.05
RNU6-540P-201ENST00000384622 ABI1Q8IZP0 508 aa2.27□□□□□ -2.05
RNU6-540P-201ENST00000384622 LMCD1Q9NZU5 365 aa2.27□□□□□ -2.05
RNU6-540P-201ENST00000384622 SPINK2P20155 84 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 CTBSQ01459 385 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 C4orf48Q5BLP8 95 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 METTL3Q86U44 580 aaKnown RBP2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 GGNQ86UU5 652 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 CADPS2Q86UW7 1296 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 RETREG3Q86VR2 466 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 BPHLQ86WA6 291 aaPredicted RBP2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 ZSCAN18Q8TBC5 510 aaPredicted RBP2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 HLA-CQ95604 372 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 LENG1Q96BZ8 264 aaPredicted RBP2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 USP21Q9UK80 565 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 MAP4K5Q9Y4K4 846 aa2.26□□□□□ -2.05
RNU6-540P-201ENST00000384622 GRIK1P39086 918 aa2.25□□□□□ -2.05
RNU6-540P-201ENST00000384622 ERFEQ4G0M1 354 aa2.25□□□□□ -2.05
RNU6-540P-201ENST00000384622 INTS5Q6P9B9 1019 aaKnown RBP2.25□□□□□ -2.05
RNU6-540P-201ENST00000384622 LCNL1Q6ZST4 164 aa2.25□□□□□ -2.05
RNU6-540P-201ENST00000384622 SIAH1Q8IUQ4 282 aa2.25□□□□□ -2.05
RNU6-540P-201ENST00000384622 TOX2Q96NM4 488 aa2.25□□□□□ -2.05
RNU6-540P-201ENST00000384622 SLC38A3Q99624 504 aa2.25□□□□□ -2.05
RNU6-540P-201ENST00000384622 ATXN7L1Q9ULK2 861 aaPredicted RBP2.25□□□□□ -2.05
RNU6-540P-201ENST00000384622 ATP5J2-PTCD1G3V325 749 aa2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 PTCD1O75127 700 aaKnown RBP2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 KDM4AO75164 1064 aa2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 F11P03951 625 aa2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 CHGAP10645 457 aaKnown RBP2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 FGFR3P22607 806 aa2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 ADH6P28332 368 aa2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 RNF144AP50876 292 aaPredicted RBP2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 ECM1Q16610 540 aa2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 DTX1Q86Y01 620 aa2.24□□□□□ -2.05
RNU6-540P-201ENST00000384622 ITGB5P18084 799 aa2.23□□□□□ -2.05
RNU6-540P-201ENST00000384622 CFPP27918 469 aa2.23□□□□□ -2.05
RNU6-540P-201ENST00000384622 CTHP32929 405 aa2.23□□□□□ -2.05
RNU6-540P-201ENST00000384622 POU4F2Q12837 409 aa2.23□□□□□ -2.05
RNU6-540P-201ENST00000384622 SHISA2Q6UWI4 295 aa2.23□□□□□ -2.05
RNU6-540P-201ENST00000384622 FCHSD1Q86WN1 690 aa2.23□□□□□ -2.05
RNU6-540P-201ENST00000384622 THBS1P07996 1170 aa2.22□□□□□ -2.05
RNU6-540P-201ENST00000384622 ZSCAN22P10073 491 aaPredicted RBP2.22□□□□□ -2.05
RNU6-540P-201ENST00000384622 ALAS2P22557 587 aa2.22□□□□□ -2.05
RNU6-540P-201ENST00000384622 PTGIRP43119 386 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms