RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CYLDQ9NQC7 956 aa5.2□□□□□ -1.58
VPS13A-206ENST00000376646 SOS2Q07890 1332 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-206ENST00000376646 ESPNB1AK53 854 aa5.19□□□□□ -1.58
VPS13A-206ENST00000376646 LILRA1O75019 489 aa5.19□□□□□ -1.58
VPS13A-206ENST00000376646 INSM2Q96T92 566 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-206ENST00000376646 NDUFB9Q9Y6M9 179 aa5.19□□□□□ -1.58
VPS13A-206ENST00000376646 CTSOP43234 321 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-206ENST00000376646 DHX9Q08211 1270 aaKnown RBP5.18□□□□□ -1.58
VPS13A-206ENST00000376646 KDF1Q8NAX2 398 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-206ENST00000376646 TTLL8A6PVC2 850 aa5.18□□□□□ -1.58
VPS13A-206ENST00000376646 H3BM21 787 aa5.17□□□□□ -1.58
VPS13A-206ENST00000376646 GMPRP36959 345 aa5.17□□□□□ -1.58
VPS13A-206ENST00000376646 NR1H3Q13133 447 aa5.17□□□□□ -1.58
VPS13A-206ENST00000376646 SPINT1O43278 529 aa5.17□□□□□ -1.58
VPS13A-206ENST00000376646 SCTRP47872 440 aa5.16□□□□□ -1.58
VPS13A-206ENST00000376646 NPAS3Q8IXF0 933 aa5.16□□□□□ -1.58
VPS13A-206ENST00000376646 GDPD2Q9HCC8 539 aa5.16□□□□□ -1.58
VPS13A-206ENST00000376646 ADH1AP07327 375 aa5.16□□□□□ -1.58
VPS13A-206ENST00000376646 IRF5Q13568 498 aa5.16□□□□□ -1.58
VPS13A-206ENST00000376646 IRF7Q92985 503 aa5.16□□□□□ -1.58
VPS13A-206ENST00000376646 POLMQ9NP87 494 aaPredicted RBP5.16□□□□□ -1.58
VPS13A-206ENST00000376646 PPFIA3O75145 1194 aa5.14□□□□□ -1.59
VPS13A-206ENST00000376646 PTSQ03393 145 aa5.14□□□□□ -1.59
VPS13A-206ENST00000376646 ABL2P42684 1182 aa5.14□□□□□ -1.59
VPS13A-206ENST00000376646 VAC14Q08AM6 782 aa5.14□□□□□ -1.59
VPS13A-206ENST00000376646 TSGA10IPQ3SY00 556 aa5.14□□□□□ -1.59
VPS13A-206ENST00000376646 FOXD4L5Q5VV16 416 aaPredicted RBP5.14□□□□□ -1.59
VPS13A-206ENST00000376646 PCDHB11Q9Y5F2 797 aa5.14□□□□□ -1.59
VPS13A-206ENST00000376646 PTGIRP43119 386 aa5.13□□□□□ -1.59
VPS13A-206ENST00000376646 MCM6Q14566 821 aa5.13□□□□□ -1.59
VPS13A-206ENST00000376646 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.13□□□□□ -1.59
VPS13A-206ENST00000376646 SEPT12Q8IYM1 358 aa5.13□□□□□ -1.59
VPS13A-206ENST00000376646 RNF217Q8TC41 542 aa5.13□□□□□ -1.59
VPS13A-206ENST00000376646 CDCA7Q9BWT1 371 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-206ENST00000376646 SOCS7O14512 581 aa5.13□□□□□ -1.59
VPS13A-206ENST00000376646 CCDC85AQ96PX6 553 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-206ENST00000376646 CEP126Q9P2H0 1117 aa5.12□□□□□ -1.59
VPS13A-206ENST00000376646 APBB1O00213 710 aa5.12□□□□□ -1.59
VPS13A-206ENST00000376646 MEN1O00255 615 aa5.12□□□□□ -1.59
VPS13A-206ENST00000376646 ERVK-9P63128 1117 aa5.12□□□□□ -1.59
VPS13A-206ENST00000376646 KANK3Q6NY19 840 aa5.12□□□□□ -1.59
VPS13A-206ENST00000376646 PRICKLE2Q7Z3G6 844 aa5.12□□□□□ -1.59
VPS13A-206ENST00000376646 GPR161Q8N6U8 529 aaKnown RBP5.12□□□□□ -1.59
VPS13A-206ENST00000376646 POM121Q96HA1 1249 aa5.12□□□□□ -1.59
VPS13A-206ENST00000376646 RAB6BQ9NRW1 208 aa5.12□□□□□ -1.59
VPS13A-206ENST00000376646 SENP3-EIF4A1A0A087X0R7 540 aa5.11□□□□□ -1.59
VPS13A-206ENST00000376646 ATP5J2-PTCD1G3V325 749 aa5.11□□□□□ -1.59
VPS13A-206ENST00000376646 STAU1O95793 577 aaKnown RBP5.11□□□□□ -1.59
VPS13A-206ENST00000376646 RHOQP17081 205 aa5.11□□□□□ -1.59
VPS13A-206ENST00000376646 CCDC155Q8N6L0 562 aa5.11□□□□□ -1.59
VPS13A-206ENST00000376646 A0A1W2PRU2 124 aa5.11□□□□□ -1.59
VPS13A-206ENST00000376646 CC2D2BQ6DHV5 1058 aa5.11□□□□□ -1.59
VPS13A-206ENST00000376646 OSBPL3Q9H4L5 887 aa5.11□□□□□ -1.59
VPS13A-206ENST00000376646 K7ELQ4 463 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-206ENST00000376646 SLURP2P0DP57 97 aa5.1□□□□□ -1.59
VPS13A-206ENST00000376646 ARHGEF10LQ9HCE6 1279 aa5.1□□□□□ -1.59
VPS13A-206ENST00000376646 ZNF330Q9Y3S2 320 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-206ENST00000376646 SLC35F4A4IF30 521 aa5.09□□□□□ -1.59
VPS13A-206ENST00000376646 VSIG8P0DPA2 414 aa5.09□□□□□ -1.59
VPS13A-206ENST00000376646 RNF20Q5VTR2 975 aa5.09□□□□□ -1.59
VPS13A-206ENST00000376646 COG6Q9Y2V7 657 aa5.09□□□□□ -1.59
VPS13A-206ENST00000376646 KRT76Q01546 638 aa5.09□□□□□ -1.59
VPS13A-206ENST00000376646 CUEDC1Q9NWM3 386 aaPredicted RBP5.09□□□□□ -1.59
VPS13A-206ENST00000376646 CDC14CA4D256 554 aa5.08□□□□□ -1.6
VPS13A-206ENST00000376646 TRAK2O60296 914 aa5.08□□□□□ -1.6
VPS13A-206ENST00000376646 LYSMD3Q7Z3D4 306 aa5.08□□□□□ -1.6
VPS13A-206ENST00000376646 MSTNO14793 375 aa5.08□□□□□ -1.6
VPS13A-206ENST00000376646 ITGA6P23229 1130 aa5.08□□□□□ -1.6
VPS13A-206ENST00000376646 EIF4G2P78344 907 aaKnown RBP eCLIP5.08□□□□□ -1.6
VPS13A-206ENST00000376646 VWA5B2Q8N398 1253 aa5.08□□□□□ -1.6
VPS13A-206ENST00000376646 TXKP42681 527 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 RNFT1Q5M7Z0 435 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 PHTF2Q8N3S3 785 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 PRM3Q9NNZ6 103 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 PIK3CDO00329 1044 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 RNF144AP50876 292 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-206ENST00000376646 MCCD1P59942 119 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-206ENST00000376646 POU4F2Q12837 409 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 OXLD1Q5BKU9 147 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 CYP2U1Q7Z449 544 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 RNF135Q8IUD6 432 aa5.07□□□□□ -1.6
VPS13A-206ENST00000376646 IL2RAP01589 272 aa5.06□□□□□ -1.6
VPS13A-206ENST00000376646 SLFNL1Q499Z3 407 aa5.06□□□□□ -1.6
VPS13A-206ENST00000376646 SLC27A3Q5K4L6 730 aa5.06□□□□□ -1.6
VPS13A-206ENST00000376646 CNTNAP3BQ96NU0 1288 aa5.06□□□□□ -1.6
VPS13A-206ENST00000376646 CNTNAP3Q9BZ76 1288 aa5.06□□□□□ -1.6
VPS13A-206ENST00000376646 ESF1Q9H501 851 aaKnown RBP5.06□□□□□ -1.6
VPS13A-206ENST00000376646 DOLKQ9UPQ8 538 aa5.06□□□□□ -1.6
VPS13A-206ENST00000376646 CLN3Q13286 438 aa5.06□□□□□ -1.6
VPS13A-206ENST00000376646 NLRP3Q96P20 1036 aa5.06□□□□□ -1.6
VPS13A-206ENST00000376646 COL25A1Q9BXS0 654 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-206ENST00000376646 CNKSR1Q969H4 720 aa5.05□□□□□ -1.6
VPS13A-206ENST00000376646 POM121CA8CG34 1229 aa5.04□□□□□ -1.6
VPS13A-206ENST00000376646 MYCP01106 439 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-206ENST00000376646 ZNF592Q92610 1267 aa5.04□□□□□ -1.6
VPS13A-206ENST00000376646 GPR25O00155 361 aa5.04□□□□□ -1.6
VPS13A-206ENST00000376646 PHKA2P46019 1235 aa5.04□□□□□ -1.6
VPS13A-206ENST00000376646 SEMA3FQ13275 785 aa5.04□□□□□ -1.6
VPS13A-206ENST00000376646 RIPOR1Q6ZS17 1223 aa5.04□□□□□ -1.6
VPS13A-206ENST00000376646 GAS2L1Q99501 681 aaPredicted RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms