RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TMCO3Q6UWJ1 677 aa14.58□□□□□ -0.08
VPS13A-204ENST00000376634 CTNNA3Q9UI47 895 aa14.58□□□□□ -0.08
VPS13A-204ENST00000376634 FGD6Q6ZV73 1430 aa14.58□□□□□ -0.08
VPS13A-204ENST00000376634 PPM1EQ8WY54 764 aa14.58□□□□□ -0.08
VPS13A-204ENST00000376634 CABP4P57796 275 aa14.57□□□□□ -0.08
VPS13A-204ENST00000376634 ZNF287Q9HBT7 754 aa14.57□□□□□ -0.08
VPS13A-204ENST00000376634 HDGFL1Q5TGJ6 251 aa14.57□□□□□ -0.08
VPS13A-204ENST00000376634 PDIA4P13667 645 aaKnown RBP14.57□□□□□ -0.08
VPS13A-204ENST00000376634 AACSQ86V21 672 aa14.57□□□□□ -0.08
VPS13A-204ENST00000376634 NOB1Q9ULX3 412 aaKnown RBP14.57□□□□□ -0.08
VPS13A-204ENST00000376634 MAPK8IP2Q13387 824 aaPredicted RBP14.57□□□□□ -0.08
VPS13A-204ENST00000376634 STAC3Q96MF2 364 aa14.57□□□□□ -0.08
VPS13A-204ENST00000376634 HOOK3Q86VS8 718 aa14.56□□□□□ -0.08
VPS13A-204ENST00000376634 KRT32Q14532 448 aa14.56□□□□□ -0.08
VPS13A-204ENST00000376634 K7ELQ4 463 aaPredicted RBP14.56□□□□□ -0.08
VPS13A-204ENST00000376634 CCDC113Q9H0I3 377 aa14.56□□□□□ -0.08
VPS13A-204ENST00000376634 BRPF3Q9ULD4 1205 aa14.56□□□□□ -0.08
VPS13A-204ENST00000376634 KIF2AO00139 706 aaPredicted RBP14.56□□□□□ -0.08
VPS13A-204ENST00000376634 TATP17735 454 aaPredicted RBP14.56□□□□□ -0.08
VPS13A-204ENST00000376634 NUP62CLQ9H1M0 184 aa14.56□□□□□ -0.08
VPS13A-204ENST00000376634 GSTTP1A0A1W2PQM5 241 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 ZSCAN29Q8IWY8 852 aaPredicted RBP14.55□□□□□ -0.08
VPS13A-204ENST00000376634 ESCO1Q5FWF5 840 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 BLOC1S2Q6QNY1 142 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 IFFO1Q0D2I5 559 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 LUZP1Q86V48 1076 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 GGNBP2Q9H3C7 697 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 GOPCQ9HD26 462 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 TWISTNBQ3B726 338 aaPredicted RBP14.55□□□□□ -0.08
VPS13A-204ENST00000376634 GIGYF2Q6Y7W6 1299 aaKnown RBP14.55□□□□□ -0.08
VPS13A-204ENST00000376634 SCLT1Q96NL6 688 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 MAP4K4O95819 1239 aaPredicted RBP14.55□□□□□ -0.08
VPS13A-204ENST00000376634 MTHFSP49914 203 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 EHBP1L1Q8N3D4 1523 aa14.55□□□□□ -0.08
VPS13A-204ENST00000376634 FGFR1OPO95684 399 aaKnown RBP14.54□□□□□ -0.08
VPS13A-204ENST00000376634 TSG101Q99816 390 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 FAM135AQ9P2D6 1515 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 GCOM1H8Y6P7 765 aaPredicted RBP14.54□□□□□ -0.08
VPS13A-204ENST00000376634 MYZAPP0CAP1 466 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 CFAP100Q494V2 611 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 GBP3Q9H0R5 595 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 MYL6BP14649 208 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 PRKAR2BP31323 418 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 TMOD2Q9NZR1 351 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 CASTP20810 708 aaKnown RBP14.54□□□□□ -0.08
VPS13A-204ENST00000376634 LRP2BPQ9P2M1 347 aa14.54□□□□□ -0.08
VPS13A-204ENST00000376634 IBSPP21815 317 aaPredicted RBP14.53□□□□□ -0.08
VPS13A-204ENST00000376634 USP5P45974 858 aa14.53□□□□□ -0.08
VPS13A-204ENST00000376634 PDRG1Q9NUG6 133 aa14.53□□□□□ -0.08
VPS13A-204ENST00000376634 KIF5CO60282 957 aa14.53□□□□□ -0.08
VPS13A-204ENST00000376634 CASQ1P31415 396 aa14.53□□□□□ -0.08
VPS13A-204ENST00000376634 SPDYE4A6NLX3 237 aa14.53□□□□□ -0.08
VPS13A-204ENST00000376634 FKBP15Q5T1M5 1219 aa14.53□□□□□ -0.08
VPS13A-204ENST00000376634 MAP3K11Q16584 847 aa14.53□□□□□ -0.08
VPS13A-204ENST00000376634 FAM107BQ9H098 131 aa14.53□□□□□ -0.08
VPS13A-204ENST00000376634 SLC4A2P04920 1241 aa14.52□□□□□ -0.08
VPS13A-204ENST00000376634 SFPQP23246 707 aaKnown RBP eCLIP14.52□□□□□ -0.08
VPS13A-204ENST00000376634 GRPEL1Q9HAV7 217 aa14.52□□□□□ -0.08
VPS13A-204ENST00000376634 SPG7Q9UQ90 795 aa14.52□□□□□ -0.08
VPS13A-204ENST00000376634 TICAM2Q86XR7 235 aa14.52□□□□□ -0.08
VPS13A-204ENST00000376634 PPP6R1Q9UPN7 881 aa14.52□□□□□ -0.08
VPS13A-204ENST00000376634 CCDC178Q5BJE1 867 aa14.52□□□□□ -0.09
VPS13A-204ENST00000376634 UBXN4Q92575 508 aa14.52□□□□□ -0.09
VPS13A-204ENST00000376634 PIBF1Q8WXW3 757 aa14.52□□□□□ -0.09
VPS13A-204ENST00000376634 SPINK5Q9NQ38 1064 aaPredicted RBP14.51□□□□□ -0.09
VPS13A-204ENST00000376634 U3KPZ7 1027 aaPredicted RBP14.51□□□□□ -0.09
VPS13A-204ENST00000376634 POLA1P09884 1462 aaPredicted RBP14.51□□□□□ -0.09
VPS13A-204ENST00000376634 CTNNBL1Q8WYA6 563 aaPredicted RBP14.51□□□□□ -0.09
VPS13A-204ENST00000376634 ANKRD18BA2A2Z9 1011 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 TAOK3Q9H2K8 898 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 COMMD10Q9Y6G5 202 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 PNISRQ8TF01 805 aaKnown RBP14.51□□□□□ -0.09
VPS13A-204ENST00000376634 ANKRD50Q9ULJ7 1429 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 ZSCAN12O43309 604 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 TOM1L2Q6ZVM7 507 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 PDCL2Q8N4E4 241 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 AIDAQ96BJ3 306 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 JAKMIP1Q96N16 626 aaKnown RBP14.51□□□□□ -0.09
VPS13A-204ENST00000376634 CADPSQ9ULU8 1353 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 CYB5RLQ6IPT4 315 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 CWC27Q6UX04 472 aaKnown RBP14.51□□□□□ -0.09
VPS13A-204ENST00000376634 TCP11L2Q8N4U5 519 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 ZSCAN31Q96LW9 406 aaPredicted RBP14.51□□□□□ -0.09
VPS13A-204ENST00000376634 DRC1Q96MC2 740 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 RAI14Q9P0K7 980 aa14.51□□□□□ -0.09
VPS13A-204ENST00000376634 MACROD2A1Z1Q3 448 aa14.5□□□□□ -0.09
VPS13A-204ENST00000376634 IGHMBP2P38935 993 aaKnown RBP14.5□□□□□ -0.09
VPS13A-204ENST00000376634 HMGB2P26583 209 aaKnown RBP14.5□□□□□ -0.09
VPS13A-204ENST00000376634 PHAXQ9H814 394 aaKnown RBP14.5□□□□□ -0.09
VPS13A-204ENST00000376634 UBE4AQ14139 1066 aa14.5□□□□□ -0.09
VPS13A-204ENST00000376634 SMC1AQ14683 1233 aaKnown RBP14.5□□□□□ -0.09
VPS13A-204ENST00000376634 TMEM87AQ8NBN3 555 aa14.5□□□□□ -0.09
VPS13A-204ENST00000376634 MICALCLQ6ZW33 695 aa14.5□□□□□ -0.09
VPS13A-204ENST00000376634 ADAMTS8Q9UP79 889 aa14.5□□□□□ -0.09
VPS13A-204ENST00000376634 PDZRN3Q9UPQ7 1066 aa14.5□□□□□ -0.09
VPS13A-204ENST00000376634 WDHD1O75717 1129 aaPredicted RBP14.49□□□□□ -0.09
VPS13A-204ENST00000376634 CFAP57Q96MR6 1250 aa14.49□□□□□ -0.09
VPS13A-204ENST00000376634 PDE3AQ14432 1141 aa14.49□□□□□ -0.09
VPS13A-204ENST00000376634 ZNF530Q6P9A1 599 aaPredicted RBP14.49□□□□□ -0.09
VPS13A-204ENST00000376634 CTNNA2P26232 953 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms