RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CCDC73Q6ZRK6 1079 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 MAP10Q9P2G4 905 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 TSC22D1Q15714 1073 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 NUTM2DQ5VT03 806 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-202ENST00000375405 TMOD2Q9NZR1 351 aa5.42□□□□□ -1.54
SCN1A-202ENST00000375405 DYNC1I1O14576 645 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 CRCPO75575 148 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 NUCB1Q02818 461 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 STIM1Q13586 685 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC144CPQ8IYA2 1237 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 DZIP1LQ8IYY4 767 aaKnown RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 SDF4Q9BRK5 362 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 NAT10Q9H0A0 1025 aaKnown RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 ZCCHC6Q5VYS8 1495 aaKnown RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 WDR46O15213 610 aaKnown RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 LPXNO60711 386 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 ARID4AP29374 1257 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC96Q2M329 555 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 CFAP70Q5T0N1 1121 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 LCA5Q86VQ0 697 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 DDX49Q9Y6V7 483 aaKnown RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 RFC1P35251 1148 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 CDR2Q01850 454 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 AIMP1Q12904 312 aaKnown RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 KIF4BQ2VIQ3 1234 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 WDR48Q8TAF3 677 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 UTP14AQ9BVJ6 771 aaKnown RBP5.41□□□□□ -1.54
SCN1A-202ENST00000375405 SYNCQ9H7C4 482 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 PPP2R5CQ13362 524 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 VCXQ9H320 206 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 DNA2P51530 1060 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC82Q8N4S0 544 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 CCT6BQ92526 530 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 NAA25Q14CX7 972 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 PRR16Q569H4 304 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC63Q8NA47 563 aa5.41□□□□□ -1.54
SCN1A-202ENST00000375405 TTC30AQ86WT1 665 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 SUFUQ9UMX1 484 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC178Q5BJE1 867 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 CC2D2BQ6DHV5 1058 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 PALM2Q8IXS6 379 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 TMCO5AQ8N6Q1 288 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 GSDMBQ8TAX9 411 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 ZNF428Q96B54 188 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 SPC25Q9HBM1 224 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 IKBKGQ9Y6K9 419 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 CGNL1Q0VF96 1302 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 CCDC14Q49A88 953 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 PSME1Q06323 249 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 IFFO1Q0D2I5 559 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 PDE1CQ14123 709 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-202ENST00000375405 CLUAP1Q96AJ1 413 aa5.4□□□□□ -1.54
SCN1A-202ENST00000375405 GBP7Q8N8V2 638 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-202ENST00000375405 RCAN3Q9UKA8 241 aa5.4□□□□□ -1.55
SCN1A-202ENST00000375405 TERF1P54274 439 aa5.4□□□□□ -1.55
SCN1A-202ENST00000375405 PAIP2Q9BPZ3 127 aaKnown RBP5.4□□□□□ -1.55
SCN1A-202ENST00000375405 HINFPQ9BQA5 517 aa5.4□□□□□ -1.55
SCN1A-202ENST00000375405 BMP2KQ9NSY1 1161 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-202ENST00000375405 CEP83Q9Y592 693 aa5.4□□□□□ -1.55
SCN1A-202ENST00000375405 BICDL2A1A5D9 508 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 CEBPZQ03701 1054 aaKnown RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 G3BP1Q13283 466 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 FKBP15Q5T1M5 1219 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 C6orf163Q5TEZ5 329 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 KIF6Q6ZMV9 814 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 SEPT14Q6ZU15 432 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 CWC25Q9NXE8 425 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 PPP1R12BO60237 982 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 ARID5AQ03989 594 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 KIAA1328Q86T90 577 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 CHMP6Q96FZ7 201 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 RBM42Q9BTD8 480 aaKnown RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 SRRTQ9BXP5 876 aaKnown RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 TBC1D2BQ9UPU7 963 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 FSD2A1L4K1 749 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 RBM10P98175 930 aaKnown RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 MSL1Q68DK7 614 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 IPO4Q8TEX9 1081 aaKnown RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 FNDC3AQ9Y2H6 1198 aaKnown RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 CFAP65Q6ZU64 1925 aaKnown RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 REC8O95072 547 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 BLVRAP53004 296 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 CEP57L1Q8IYX8 460 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 LRRC43Q8N309 656 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 TAF4BQ92750 862 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 MPHOSPH6Q99547 160 aaKnown RBP5.39□□□□□ -1.55
SCN1A-202ENST00000375405 STRN4Q9NRL3 753 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 SLC4A1P02730 911 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 NUP133Q8WUM0 1156 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 TRIM35Q9UPQ4 493 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 SMTNL1A8MU46 457 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 PDE6AP16499 860 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 AFAP1L1Q8TED9 768 aa5.39□□□□□ -1.55
SCN1A-202ENST00000375405 RAD54L2Q9Y4B4 1467 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 FAM13AO94988 1023 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 CLNS1AP54105 237 aaKnown RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 SARNPP82979 210 aaKnown RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 ZBTB33Q86T24 672 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 CEP120Q8N960 986 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 DCAF11Q8TEB1 546 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms