RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ANKRD26Q9UPS8 1709 aa29.91■■■□□ 2.38
CCDC28B-201ENST00000373602 RAPGEF4Q8WZA2 1011 aa29.91■■■□□ 2.38
CCDC28B-201ENST00000373602 BTAF1O14981 1849 aa29.91■■■□□ 2.38
CCDC28B-201ENST00000373602 KAT6BQ8WYB5 2073 aa29.89■■■□□ 2.38
CCDC28B-201ENST00000373602 PPM1GO15355 546 aaPredicted RBP29.89■■■□□ 2.38
CCDC28B-201ENST00000373602 WASHC2AQ641Q2 1341 aa29.89■■■□□ 2.38
CCDC28B-201ENST00000373602 TATP17735 454 aaPredicted RBP29.88■■■□□ 2.37
CCDC28B-201ENST00000373602 POLKQ9UBT6 870 aa29.88■■■□□ 2.37
CCDC28B-201ENST00000373602 MAP2P11137 1827 aaKnown RBP29.87■■■□□ 2.37
CCDC28B-201ENST00000373602 STK32BQ9NY57 414 aa29.85■■■□□ 2.37
CCDC28B-201ENST00000373602 PRIM1P49642 420 aaKnown RBP29.84■■■□□ 2.37
CCDC28B-201ENST00000373602 NSD2O96028 1365 aa29.84■■■□□ 2.37
CCDC28B-201ENST00000373602 NCAPD2Q15021 1401 aa29.84■■■□□ 2.37
CCDC28B-201ENST00000373602 SLC15A2Q16348 729 aa29.83■■■□□ 2.37
CCDC28B-201ENST00000373602 SPON1Q9HCB6 807 aa29.83■■■□□ 2.37
CCDC28B-201ENST00000373602 DOT1LQ8TEK3 1739 aa29.82■■■□□ 2.36
CCDC28B-201ENST00000373602 TNNT2P45379 298 aaPredicted RBP29.82■■■□□ 2.36
CCDC28B-201ENST00000373602 SYTL4Q96C24 671 aaPredicted RBP29.82■■■□□ 2.36
CCDC28B-201ENST00000373602 CASZ1Q86V15 1759 aa29.82■■■□□ 2.36
CCDC28B-201ENST00000373602 PCDH11XQ9BZA7 1347 aa29.8■■■□□ 2.36
CCDC28B-201ENST00000373602 PCDH11YQ9BZA8 1340 aa29.8■■■□□ 2.36
CCDC28B-201ENST00000373602 PAPPAQ13219 1627 aa29.79■■■□□ 2.36
CCDC28B-201ENST00000373602 EYA1Q99502 592 aa29.79■■■□□ 2.36
CCDC28B-201ENST00000373602 PDGFDQ9GZP0 370 aaPredicted RBP29.79■■■□□ 2.36
CCDC28B-201ENST00000373602 KIF7Q2M1P5 1343 aa29.78■■■□□ 2.36
CCDC28B-201ENST00000373602 LRRC4BQ9NT99 713 aa29.78■■■□□ 2.36
CCDC28B-201ENST00000373602 SLC27A3Q5K4L6 730 aa29.76■■■□□ 2.35
CCDC28B-201ENST00000373602 KNSTRNQ9Y448 316 aa29.76■■■□□ 2.35
CCDC28B-201ENST00000373602 CYP27B1O15528 508 aa29.75■■■□□ 2.35
CCDC28B-201ENST00000373602 EIF4A2Q14240 407 aaKnown RBP29.75■■■□□ 2.35
CCDC28B-201ENST00000373602 PKD1L3Q7Z443 1732 aa29.74■■■□□ 2.35
CCDC28B-201ENST00000373602 MORC1Q86VD1 984 aa29.73■■■□□ 2.35
CCDC28B-201ENST00000373602 ZBTB7AO95365 584 aa29.71■■■□□ 2.35
CCDC28B-201ENST00000373602 ZNF827Q17R98 1081 aa29.71■■■□□ 2.35
CCDC28B-201ENST00000373602 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.7■■■□□ 2.35
CCDC28B-201ENST00000373602 PPP1R1BQ9UD71 204 aaPredicted RBP29.7■■■□□ 2.35
CCDC28B-201ENST00000373602 SPG7Q9UQ90 795 aa29.7■■■□□ 2.35
CCDC28B-201ENST00000373602 LY75O60449 1722 aa29.7■■■□□ 2.34
CCDC28B-201ENST00000373602 AKT1S1Q96B36 256 aa29.69■■■□□ 2.34
CCDC28B-201ENST00000373602 AMER1Q5JTC6 1135 aaPredicted RBP29.68■■■□□ 2.34
CCDC28B-201ENST00000373602 NKX1-1Q15270 411 aaPredicted RBP29.67■■■□□ 2.34
CCDC28B-201ENST00000373602 KCNQ4P56696 695 aa29.66■■■□□ 2.34
CCDC28B-201ENST00000373602 ATF5Q9Y2D1 282 aaPredicted RBP29.66■■■□□ 2.34
CCDC28B-201ENST00000373602 IGSF1Q8N6C5 1336 aa29.66■■■□□ 2.34
CCDC28B-201ENST00000373602 PTGER2P43116 358 aa29.65■■■□□ 2.34
CCDC28B-201ENST00000373602 MTFR1LQ9H019 292 aa29.65■■■□□ 2.34
CCDC28B-201ENST00000373602 PLEKHG2Q9H7P9 1386 aa29.64■■■□□ 2.34
CCDC28B-201ENST00000373602 CCNL1Q9UK58 526 aaPredicted RBP29.64■■■□□ 2.34
CCDC28B-201ENST00000373602 TOGARAM1Q9Y4F4 1720 aa29.64■■■□□ 2.34
CCDC28B-201ENST00000373602 PER1O15534 1290 aaPredicted RBP29.63■■■□□ 2.33
CCDC28B-201ENST00000373602 MPRIPQ6WCQ1 1025 aa29.63■■■□□ 2.33
CCDC28B-201ENST00000373602 IFNL2Q8IZJ0 200 aa29.6■■■□□ 2.33
CCDC28B-201ENST00000373602 QSER1Q2KHR3 1735 aa29.59■■■□□ 2.33
CCDC28B-201ENST00000373602 ITGB4P16144 1822 aa29.59■■■□□ 2.33
CCDC28B-201ENST00000373602 PHKG2P15735 406 aa29.59■■■□□ 2.33
CCDC28B-201ENST00000373602 SGIP1Q9BQI5 828 aa29.59■■■□□ 2.33
CCDC28B-201ENST00000373602 PALLDQ8WX93 1383 aa29.58■■■□□ 2.33
CCDC28B-201ENST00000373602 TFCP2L1Q9NZI6 479 aa29.58■■■□□ 2.33
CCDC28B-201ENST00000373602 PNPLA7Q6ZV29 1317 aa29.57■■■□□ 2.32
CCDC28B-201ENST00000373602 PIGBQ92521 554 aa29.56■■■□□ 2.32
CCDC28B-201ENST00000373602 SMARCC1Q92922 1105 aaPredicted RBP29.56■■■□□ 2.32
CCDC28B-201ENST00000373602 SLC16A10Q8TF71 515 aa29.55■■■□□ 2.32
CCDC28B-201ENST00000373602 TUBGCP6Q96RT7 1819 aa29.53■■■□□ 2.32
CCDC28B-201ENST00000373602 HMGB2P26583 209 aaKnown RBP29.53■■■□□ 2.32
CCDC28B-201ENST00000373602 IL13P35225 146 aa29.53■■■□□ 2.32
CCDC28B-201ENST00000373602 PLEKHO1Q53GL0 409 aaPredicted RBP29.52■■■□□ 2.32
CCDC28B-201ENST00000373602 AEBP1Q8IUX7 1158 aa29.52■■■□□ 2.32
CCDC28B-201ENST00000373602 CC2D1BQ5T0F9 858 aaKnown RBP29.51■■■□□ 2.31
CCDC28B-201ENST00000373602 TMOD3Q9NYL9 352 aa29.51■■■□□ 2.31
CCDC28B-201ENST00000373602 MTHFSP49914 203 aa29.5■■■□□ 2.31
CCDC28B-201ENST00000373602 AMOTQ4VCS5 1084 aa29.5■■■□□ 2.31
CCDC28B-201ENST00000373602 NPC1L1Q9UHC9 1359 aa29.5■■■□□ 2.31
CCDC28B-201ENST00000373602 C5P01031 1676 aa29.5■■■□□ 2.31
CCDC28B-201ENST00000373602 KDRP35968 1356 aa29.49■■■□□ 2.31
CCDC28B-201ENST00000373602 SULT6B1Q6IMI4 303 aa29.48■■■□□ 2.31
CCDC28B-201ENST00000373602 HSP90AB1P08238 724 aaKnown RBP29.47■■■□□ 2.31
CCDC28B-201ENST00000373602 ARXQ96QS3 562 aa29.47■■■□□ 2.31
CCDC28B-201ENST00000373602 FHDC1Q9C0D6 1143 aaPredicted RBP29.47■■■□□ 2.31
CCDC28B-201ENST00000373602 TAF1LQ8IZX4 1826 aa29.47■■■□□ 2.31
CCDC28B-201ENST00000373602 ZNF530Q6P9A1 599 aaPredicted RBP29.46■■■□□ 2.31
CCDC28B-201ENST00000373602 DCAF5Q96JK2 942 aa29.46■■■□□ 2.31
CCDC28B-201ENST00000373602 COL24A1Q17RW2 1714 aa29.45■■■□□ 2.31
CCDC28B-201ENST00000373602 COL23A1Q86Y22 540 aaPredicted RBP29.45■■■□□ 2.31
CCDC28B-201ENST00000373602 SYT17Q9BSW7 474 aa29.45■■■□□ 2.31
CCDC28B-201ENST00000373602 ASAP1Q9ULH1 1129 aa29.45■■■□□ 2.31
CCDC28B-201ENST00000373602 ERVV-2B6SEH9 535 aa29.44■■■□□ 2.3
CCDC28B-201ENST00000373602 LOC102724428A0A0B4J2F2 783 aa29.43■■■□□ 2.3
CCDC28B-201ENST00000373602 SIK1P57059 783 aa29.43■■■□□ 2.3
CCDC28B-201ENST00000373602 DCAF8L1A6NGE4 600 aa29.42■■■□□ 2.3
CCDC28B-201ENST00000373602 POLD1P28340 1107 aa29.42■■■□□ 2.3
CCDC28B-201ENST00000373602 ATG3Q9NT62 314 aa29.42■■■□□ 2.3
CCDC28B-201ENST00000373602 KDM6AO15550 1401 aaPredicted RBP29.41■■■□□ 2.3
CCDC28B-201ENST00000373602 C4BP0C0L5 1744 aa29.41■■■□□ 2.3
CCDC28B-201ENST00000373602 MAP3K5Q99683 1374 aa29.4■■■□□ 2.3
CCDC28B-201ENST00000373602 MSH5O43196 834 aa29.4■■■□□ 2.3
CCDC28B-201ENST00000373602 FLAD1Q8NFF5 587 aa29.4■■■□□ 2.3
CCDC28B-201ENST00000373602 C1orf141Q5JVX7 400 aa29.39■■■□□ 2.3
CCDC28B-201ENST00000373602 DIAPH1O60610 1272 aaKnown RBP29.38■■■□□ 2.29
CCDC28B-201ENST00000373602 AK7Q96M32 723 aa29.38■■■□□ 2.29
CCDC28B-201ENST00000373602 LINC00116Q8NCU8 138 aa29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 196.2 ms