RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 PARP4Q9UKK3 1724 aaKnown RBP18.41■□□□□ 0.54
LDB3-204ENST00000372066 PIK3C2AO00443 1686 aa18.41■□□□□ 0.54
LDB3-204ENST00000372066 DUSP27Q5VZP5 1158 aa18.39■□□□□ 0.53
LDB3-204ENST00000372066 HDGFL2Q7Z4V5 671 aaPredicted RBP18.38■□□□□ 0.53
LDB3-204ENST00000372066 PROM2Q8N271 834 aa18.38■□□□□ 0.53
LDB3-204ENST00000372066 SLFN5Q08AF3 891 aa18.38■□□□□ 0.53
LDB3-204ENST00000372066 NME9Q86XW9 330 aa18.38■□□□□ 0.53
LDB3-204ENST00000372066 TRMT2AQ8IZ69 625 aaKnown RBP18.38■□□□□ 0.53
LDB3-204ENST00000372066 ANO8Q9HCE9 1232 aaPredicted RBP18.38■□□□□ 0.53
LDB3-204ENST00000372066 RREB1Q92766 1687 aa18.38■□□□□ 0.53
LDB3-204ENST00000372066 COL18A1P39060 1754 aa18.38■□□□□ 0.53
LDB3-204ENST00000372066 E9PSI1 815 aa18.37■□□□□ 0.53
LDB3-204ENST00000372066 NLRP2Q9NX02 1062 aa18.37■□□□□ 0.53
LDB3-204ENST00000372066 NUP188Q5SRE5 1749 aa18.36■□□□□ 0.53
LDB3-204ENST00000372066 RUNDC1Q96C34 613 aa18.36■□□□□ 0.53
LDB3-204ENST00000372066 RBM19Q9Y4C8 960 aaKnown RBP18.36■□□□□ 0.53
LDB3-204ENST00000372066 MON2Q7Z3U7 1717 aa18.36■□□□□ 0.53
LDB3-204ENST00000372066 BCL9O00512 1426 aa18.35■□□□□ 0.53
LDB3-204ENST00000372066 APAF1O14727 1248 aa18.35■□□□□ 0.53
LDB3-204ENST00000372066 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.35■□□□□ 0.53
LDB3-204ENST00000372066 AKAP12Q02952 1782 aa18.35■□□□□ 0.53
LDB3-204ENST00000372066 PEAK1Q9H792 1746 aa18.35■□□□□ 0.53
LDB3-204ENST00000372066 LRRC37A3O60309 1634 aa18.35■□□□□ 0.53
LDB3-204ENST00000372066 USP31Q70CQ4 1352 aa18.35■□□□□ 0.53
LDB3-204ENST00000372066 DCAF8L1A6NGE4 600 aa18.34■□□□□ 0.53
LDB3-204ENST00000372066 TXNRD1Q16881 649 aa18.34■□□□□ 0.53
LDB3-204ENST00000372066 CCDC146Q8IYE0 955 aa18.34■□□□□ 0.53
LDB3-204ENST00000372066 MTHFSP49914 203 aa18.34■□□□□ 0.53
LDB3-204ENST00000372066 COL3A1P02461 1466 aaPredicted RBP18.33■□□□□ 0.53
LDB3-204ENST00000372066 NFAT5O94916 1531 aa18.33■□□□□ 0.52
LDB3-204ENST00000372066 PDGFDQ9GZP0 370 aaPredicted RBP18.33■□□□□ 0.52
LDB3-204ENST00000372066 STK32BQ9NY57 414 aa18.33■□□□□ 0.52
LDB3-204ENST00000372066 ERBB3P21860 1342 aa18.32■□□□□ 0.52
LDB3-204ENST00000372066 ZBTB7AO95365 584 aa18.32■□□□□ 0.52
LDB3-204ENST00000372066 YY1P25490 414 aa18.32■□□□□ 0.52
LDB3-204ENST00000372066 ACSBG1Q96GR2 724 aa18.32■□□□□ 0.52
LDB3-204ENST00000372066 IL2RBP14784 551 aa18.31■□□□□ 0.52
LDB3-204ENST00000372066 CCDC27Q2M243 656 aa18.31■□□□□ 0.52
LDB3-204ENST00000372066 ANKRD24Q8TF21 1146 aa18.31■□□□□ 0.52
LDB3-204ENST00000372066 EDC4Q6P2E9 1401 aaKnown RBP18.3■□□□□ 0.52
LDB3-204ENST00000372066 SLC15A2Q16348 729 aa18.3■□□□□ 0.52
LDB3-204ENST00000372066 EXOC6Q8TAG9 804 aa18.3■□□□□ 0.52
LDB3-204ENST00000372066 ATF5Q9Y2D1 282 aaPredicted RBP18.3■□□□□ 0.52
LDB3-204ENST00000372066 TNNT2P45379 298 aaPredicted RBP18.29■□□□□ 0.52
LDB3-204ENST00000372066 TNS2Q63HR2 1409 aa18.28■□□□□ 0.52
LDB3-204ENST00000372066 FYB1O15117 783 aa18.28■□□□□ 0.52
LDB3-204ENST00000372066 WDR63Q8IWG1 891 aa18.28■□□□□ 0.52
LDB3-204ENST00000372066 RGPD5Q99666 1765 aa18.26■□□□□ 0.51
LDB3-204ENST00000372066 WWC1Q8IX03 1113 aa18.26■□□□□ 0.51
LDB3-204ENST00000372066 LTV1Q96GA3 475 aaPredicted RBP18.26■□□□□ 0.51
LDB3-204ENST00000372066 MAP2P11137 1827 aaKnown RBP18.26■□□□□ 0.51
LDB3-204ENST00000372066 SBF2Q86WG5 1849 aa18.26■□□□□ 0.51
LDB3-204ENST00000372066 ABCC6O95255 1503 aa18.26■□□□□ 0.51
LDB3-204ENST00000372066 FANCIQ9NVI1 1328 aa18.26■□□□□ 0.51
LDB3-204ENST00000372066 IP6K1Q92551 441 aa18.25■□□□□ 0.51
LDB3-204ENST00000372066 PNNQ9H307 717 aaKnown RBP18.25■□□□□ 0.51
LDB3-204ENST00000372066 PTGER2P43116 358 aa18.25■□□□□ 0.51
LDB3-204ENST00000372066 GGNBP2Q9H3C7 697 aa18.25■□□□□ 0.51
LDB3-204ENST00000372066 RGPD3A6NKT7 1758 aaPredicted RBP18.24■□□□□ 0.51
LDB3-204ENST00000372066 RGPD4Q7Z3J3 1758 aa18.24■□□□□ 0.51
LDB3-204ENST00000372066 DDX54Q8TDD1 881 aaKnown RBP18.24■□□□□ 0.51
LDB3-204ENST00000372066 COG3Q96JB2 828 aa18.23■□□□□ 0.51
LDB3-204ENST00000372066 CRBNQ96SW2 442 aa18.22■□□□□ 0.51
LDB3-204ENST00000372066 MTFR1LQ9H019 292 aa18.22■□□□□ 0.51
LDB3-204ENST00000372066 WNK3Q9BYP7 1800 aa18.22■□□□□ 0.51
LDB3-204ENST00000372066 U2AF1L5P0DN76 240 aaPredicted RBP18.21■□□□□ 0.51
LDB3-204ENST00000372066 U2AF1Q01081 240 aaKnown RBP eCLIP18.21■□□□□ 0.51
LDB3-204ENST00000372066 AMPHP49418 695 aa18.21■□□□□ 0.51
LDB3-204ENST00000372066 PLIN1O60240 522 aa18.2■□□□□ 0.5
LDB3-204ENST00000372066 FBLN1P23142 703 aa18.2■□□□□ 0.5
LDB3-204ENST00000372066 SPINK5Q9NQ38 1064 aaPredicted RBP18.2■□□□□ 0.5
LDB3-204ENST00000372066 SYT17Q9BSW7 474 aa18.19■□□□□ 0.5
LDB3-204ENST00000372066 FHDC1Q9C0D6 1143 aaPredicted RBP18.19■□□□□ 0.5
LDB3-204ENST00000372066 MAP3K19Q56UN5 1328 aa18.19■□□□□ 0.5
LDB3-204ENST00000372066 TCERG1O14776 1098 aaKnown RBP18.18■□□□□ 0.5
LDB3-204ENST00000372066 MYH16Q9H6N6 1097 aa18.18■□□□□ 0.5
LDB3-204ENST00000372066 LRRC4BQ9NT99 713 aa18.18■□□□□ 0.5
LDB3-204ENST00000372066 DIAPH1O60610 1272 aaKnown RBP18.17■□□□□ 0.5
LDB3-204ENST00000372066 CT47B1P0C2W7 299 aaPredicted RBP18.17■□□□□ 0.5
LDB3-204ENST00000372066 HOXC9P31274 260 aa18.17■□□□□ 0.5
LDB3-204ENST00000372066 SYTL4Q96C24 671 aaPredicted RBP18.17■□□□□ 0.5
LDB3-204ENST00000372066 CASZ1Q86V15 1759 aa18.17■□□□□ 0.5
LDB3-204ENST00000372066 PDE3AQ14432 1141 aa18.17■□□□□ 0.5
LDB3-204ENST00000372066 ZNF827Q17R98 1081 aa18.17■□□□□ 0.5
LDB3-204ENST00000372066 SGIP1Q9BQI5 828 aa18.17■□□□□ 0.5
LDB3-204ENST00000372066 MAPK8IP3Q9UPT6 1336 aa18.17■□□□□ 0.5
LDB3-204ENST00000372066 USP54Q70EL1 1684 aa18.16■□□□□ 0.5
LDB3-204ENST00000372066 IL16Q14005 1332 aa18.16■□□□□ 0.5
LDB3-204ENST00000372066 MS4A1P11836 297 aa18.16■□□□□ 0.5
LDB3-204ENST00000372066 PRIM1P49642 420 aaKnown RBP18.16■□□□□ 0.5
LDB3-204ENST00000372066 ARXQ96QS3 562 aa18.16■□□□□ 0.5
LDB3-204ENST00000372066 PLEKHF1Q96S99 279 aa18.16■□□□□ 0.5
LDB3-204ENST00000372066 SLC27A3Q5K4L6 730 aa18.15■□□□□ 0.5
LDB3-204ENST00000372066 ZCRB1Q8TBF4 217 aaKnown RBP18.15■□□□□ 0.5
LDB3-204ENST00000372066 AAMPQ13685 434 aa18.14■□□□□ 0.49
LDB3-204ENST00000372066 NHSQ6T4R5 1651 aa18.14■□□□□ 0.49
LDB3-204ENST00000372066 U2SURPO15042 1029 aaKnown RBP18.13■□□□□ 0.49
LDB3-204ENST00000372066 RRS1Q15050 365 aaKnown RBP18.13■□□□□ 0.49
LDB3-204ENST00000372066 AKT1S1Q96B36 256 aa18.13■□□□□ 0.49
LDB3-204ENST00000372066 LTN1O94822 1766 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms