RNA–Protein interactions for RNA: ENST00000345662.5

SPAST-202, Transcript of spastin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SPAST, Length 5,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-202ENST00000345662 C8orf34Q49A92 452 aa20.54■□□□□ 0.88
SPAST-202ENST00000345662 HDGFL1Q5TGJ6 251 aa20.54■□□□□ 0.88
SPAST-202ENST00000345662 TRERF1Q96PN7 1200 aa20.53■□□□□ 0.88
SPAST-202ENST00000345662 RBM27Q9P2N5 1060 aaKnown RBP20.53■□□□□ 0.88
SPAST-202ENST00000345662 VPS37DQ86XT2 251 aa20.53■□□□□ 0.88
SPAST-202ENST00000345662 IL1RAPL2Q9NP60 686 aa20.53■□□□□ 0.88
SPAST-202ENST00000345662 POLR3GO15318 223 aaPredicted RBP20.53■□□□□ 0.88
SPAST-202ENST00000345662 HSP90AB2PQ58FF8 381 aa20.53■□□□□ 0.88
SPAST-202ENST00000345662 LUC7LQ9NQ29 371 aaKnown RBP20.53■□□□□ 0.88
SPAST-202ENST00000345662 GTF2F1P35269 517 aaKnown RBP eCLIP20.53■□□□□ 0.88
SPAST-202ENST00000345662 ZKSCAN5Q9Y2L8 839 aa20.53■□□□□ 0.88
SPAST-202ENST00000345662 EPB41L2O43491 1005 aaKnown RBP20.52■□□□□ 0.88
SPAST-202ENST00000345662 CRACR2AQ9BSW2 395 aa20.52■□□□□ 0.88
SPAST-202ENST00000345662 MX1P20591 662 aa20.52■□□□□ 0.88
SPAST-202ENST00000345662 TBC1D9Q6ZT07 1266 aa20.52■□□□□ 0.88
SPAST-202ENST00000345662 TXLNBQ8N3L3 684 aa20.52■□□□□ 0.88
SPAST-202ENST00000345662 SH2B1Q9NRF2 756 aaPredicted RBP20.52■□□□□ 0.88
SPAST-202ENST00000345662 GPRASP1Q5JY77 1395 aa20.52■□□□□ 0.88
SPAST-202ENST00000345662 TIGD1Q96MW7 591 aa20.52■□□□□ 0.87
SPAST-202ENST00000345662 PLCD4Q9BRC7 762 aa20.52■□□□□ 0.87
SPAST-202ENST00000345662 MAP3K1Q13233 1512 aa20.52■□□□□ 0.87
SPAST-202ENST00000345662 TBC1D2BQ9UPU7 963 aa20.51■□□□□ 0.87
SPAST-202ENST00000345662 PAXBP1Q9Y5B6 917 aa20.51■□□□□ 0.87
SPAST-202ENST00000345662 SRGAP3O43295 1099 aa20.51■□□□□ 0.87
SPAST-202ENST00000345662 BMS1Q14692 1282 aaKnown RBP20.51■□□□□ 0.87
SPAST-202ENST00000345662 PRM3Q9NNZ6 103 aa20.51■□□□□ 0.87
SPAST-202ENST00000345662 SULT6B1Q6IMI4 303 aa20.51■□□□□ 0.87
SPAST-202ENST00000345662 EXOC6BQ9Y2D4 811 aa20.51■□□□□ 0.87
SPAST-202ENST00000345662 SHTN1A0MZ66 631 aa20.5■□□□□ 0.87
SPAST-202ENST00000345662 NOLC1Q14978 699 aaKnown RBP eCLIP20.5■□□□□ 0.87
SPAST-202ENST00000345662 HS1BP3Q53T59 392 aa20.5■□□□□ 0.87
SPAST-202ENST00000345662 GIMAP7Q8NHV1 300 aa20.5■□□□□ 0.87
SPAST-202ENST00000345662 TRMT1Q9NXH9 659 aaKnown RBP20.5■□□□□ 0.87
SPAST-202ENST00000345662 STIM1Q13586 685 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 GDPD2Q9HCC8 539 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 DDX19AQ9NUU7 478 aaKnown RBP20.49■□□□□ 0.87
SPAST-202ENST00000345662 TRIM22Q8IYM9 498 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 NFE2L2Q16236 605 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 KRT222Q8N1A0 295 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 CTAGE5O15320 804 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 CASQ1P31415 396 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 GSDMDP57764 484 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 CENPHQ9H3R5 247 aa20.49■□□□□ 0.87
SPAST-202ENST00000345662 SUPT6HQ7KZ85 1726 aaKnown RBP20.49■□□□□ 0.87
SPAST-202ENST00000345662 AACSQ86V21 672 aa20.48■□□□□ 0.87
SPAST-202ENST00000345662 CCDC148Q8NFR7 591 aa20.48■□□□□ 0.87
SPAST-202ENST00000345662 LRRFIP2Q9Y608 721 aaKnown RBP20.48■□□□□ 0.87
SPAST-202ENST00000345662 ABCC11Q96J66 1382 aa20.48■□□□□ 0.87
SPAST-202ENST00000345662 SMARCA5O60264 1052 aaPredicted RBP20.48■□□□□ 0.87
SPAST-202ENST00000345662 JAKMIP3Q5VZ66 844 aa20.48■□□□□ 0.87
SPAST-202ENST00000345662 CKAP2LQ8IYA6 745 aa20.48■□□□□ 0.87
SPAST-202ENST00000345662 TRIM27P14373 513 aa20.48■□□□□ 0.87
SPAST-202ENST00000345662 LIMCH1Q9UPQ0 1083 aa20.48■□□□□ 0.87
SPAST-202ENST00000345662 TRIM34Q9BYJ4 488 aa20.48■□□□□ 0.87
SPAST-202ENST00000345662 RAD21O60216 631 aa20.47■□□□□ 0.87
SPAST-202ENST00000345662 DDX11Q96FC9 970 aa20.47■□□□□ 0.87
SPAST-202ENST00000345662 GTPBP4Q9BZE4 634 aaKnown RBP20.47■□□□□ 0.87
SPAST-202ENST00000345662 NSD3Q9BZ95 1437 aa20.47■□□□□ 0.87
SPAST-202ENST00000345662 MAP9Q49MG5 647 aa20.47■□□□□ 0.87
SPAST-202ENST00000345662 ODF2Q5BJF6 829 aa20.47■□□□□ 0.87
SPAST-202ENST00000345662 FAM107BQ9H098 131 aa20.47■□□□□ 0.87
SPAST-202ENST00000345662 CDKL5O76039 1030 aa20.46■□□□□ 0.87
SPAST-202ENST00000345662 RAPGEF4Q8WZA2 1011 aa20.46■□□□□ 0.87
SPAST-202ENST00000345662 CCDC94Q9BW85 323 aaPredicted RBP20.46■□□□□ 0.87
SPAST-202ENST00000345662 TCEAL9Q9UHQ7 104 aa20.46■□□□□ 0.87
SPAST-202ENST00000345662 UBE2HP62256 183 aa20.46■□□□□ 0.87
SPAST-202ENST00000345662 KIF5CO60282 957 aa20.46■□□□□ 0.87
SPAST-202ENST00000345662 CEP135Q66GS9 1140 aa20.46■□□□□ 0.87
SPAST-202ENST00000345662 NUTM1Q86Y26 1132 aa20.45■□□□□ 0.87
SPAST-202ENST00000345662 TOP2BQ02880 1626 aa20.45■□□□□ 0.87
SPAST-202ENST00000345662 NCAPD3P42695 1498 aa20.45■□□□□ 0.86
SPAST-202ENST00000345662 HCLS1P14317 486 aaPredicted RBP20.45■□□□□ 0.86
SPAST-202ENST00000345662 SNX21Q969T3 373 aa20.45■□□□□ 0.86
SPAST-202ENST00000345662 SIL1Q9H173 461 aa20.45■□□□□ 0.86
SPAST-202ENST00000345662 TOP1P11387 765 aaKnown RBP20.45■□□□□ 0.86
SPAST-202ENST00000345662 PRPF40BQ6NWY9 871 aaKnown RBP20.45■□□□□ 0.86
SPAST-202ENST00000345662 PRAM1Q96QH2 718 aa20.45■□□□□ 0.86
SPAST-202ENST00000345662 MCM3P25205 808 aa20.44■□□□□ 0.86
SPAST-202ENST00000345662 NLRP6P59044 892 aa20.44■□□□□ 0.86
SPAST-202ENST00000345662 KIF4BQ2VIQ3 1234 aa20.44■□□□□ 0.86
SPAST-202ENST00000345662 CCDC158Q5M9N0 1113 aa20.44■□□□□ 0.86
SPAST-202ENST00000345662 GLRX3O76003 335 aaKnown RBP20.44■□□□□ 0.86
SPAST-202ENST00000345662 PSME1Q06323 249 aa20.44■□□□□ 0.86
SPAST-202ENST00000345662 ARHGAP5Q13017 1502 aa20.44■□□□□ 0.86
SPAST-202ENST00000345662 STX6O43752 255 aa20.43■□□□□ 0.86
SPAST-202ENST00000345662 CAVIN2O95810 425 aa20.43■□□□□ 0.86
SPAST-202ENST00000345662 SNW1Q13573 536 aaKnown RBP20.43■□□□□ 0.86
SPAST-202ENST00000345662 KIF1BPQ96EK5 621 aa20.43■□□□□ 0.86
SPAST-202ENST00000345662 CDK5RAP3Q96JB5 506 aa20.43■□□□□ 0.86
SPAST-202ENST00000345662 ZNF165P49910 485 aa20.43■□□□□ 0.86
SPAST-202ENST00000345662 RRAGDQ9NQL2 400 aaPredicted RBP20.43■□□□□ 0.86
SPAST-202ENST00000345662 KIAA1328Q86T90 577 aa20.42■□□□□ 0.86
SPAST-202ENST00000345662 CABP1Q9NZU7 370 aa20.42■□□□□ 0.86
SPAST-202ENST00000345662 FYB1O15117 783 aa20.42■□□□□ 0.86
SPAST-202ENST00000345662 ZNF830Q96NB3 372 aaPredicted RBP20.42■□□□□ 0.86
SPAST-202ENST00000345662 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.42■□□□□ 0.86
SPAST-202ENST00000345662 RAB11FIP3O75154 756 aa20.42■□□□□ 0.86
SPAST-202ENST00000345662 HDAC1Q13547 482 aaPredicted RBP20.42■□□□□ 0.86
SPAST-202ENST00000345662 CCAR1Q8IX12 1150 aaKnown RBP20.42■□□□□ 0.86
SPAST-202ENST00000345662 CCDC171Q6TFL3 1326 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms