RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 SLC15A2Q16348 729 aa10.28□□□□□ -0.76
ZNF540-202ENST00000343599 RGPD2P0DJD1 1756 aa10.28□□□□□ -0.76
ZNF540-202ENST00000343599 ATP10DQ9P241 1426 aa10.27□□□□□ -0.76
ZNF540-202ENST00000343599 LOC105371045A0A1W2PR82 267 aa10.27□□□□□ -0.77
ZNF540-202ENST00000343599 VSIG10Q8N0Z9 540 aa10.27□□□□□ -0.77
ZNF540-202ENST00000343599 TTC21BQ7Z4L5 1316 aa10.27□□□□□ -0.77
ZNF540-202ENST00000343599 EIF5BO60841 1220 aaKnown RBP10.27□□□□□ -0.77
ZNF540-202ENST00000343599 POGKQ9P215 609 aa10.27□□□□□ -0.77
ZNF540-202ENST00000343599 ADAMTS2O95450 1211 aa10.26□□□□□ -0.77
ZNF540-202ENST00000343599 GCP02774 474 aa10.26□□□□□ -0.77
ZNF540-202ENST00000343599 RBBP6Q7Z6E9 1792 aaKnown RBP10.26□□□□□ -0.77
ZNF540-202ENST00000343599 RC3H1Q5TC82 1133 aaKnown RBP10.26□□□□□ -0.77
ZNF540-202ENST00000343599 SMARCC1Q92922 1105 aaPredicted RBP10.26□□□□□ -0.77
ZNF540-202ENST00000343599 CDK19Q9BWU1 502 aa10.26□□□□□ -0.77
ZNF540-202ENST00000343599 PRDM11Q9NQV5 511 aa10.26□□□□□ -0.77
ZNF540-202ENST00000343599 FER1L6Q2WGJ9 1857 aa10.25□□□□□ -0.77
ZNF540-202ENST00000343599 ZNF609O15014 1411 aa10.25□□□□□ -0.77
ZNF540-202ENST00000343599 NPC1L1Q9UHC9 1359 aa10.25□□□□□ -0.77
ZNF540-202ENST00000343599 FSTL1Q12841 308 aa10.25□□□□□ -0.77
ZNF540-202ENST00000343599 PCDH10Q9P2E7 1040 aa10.25□□□□□ -0.77
ZNF540-202ENST00000343599 PLEKHG5O94827 1062 aa10.25□□□□□ -0.77
ZNF540-202ENST00000343599 PDE3BQ13370 1112 aa10.25□□□□□ -0.77
ZNF540-202ENST00000343599 CFAP70Q5T0N1 1121 aa10.24□□□□□ -0.77
ZNF540-202ENST00000343599 WAPLQ7Z5K2 1190 aa10.24□□□□□ -0.77
ZNF540-202ENST00000343599 JMYQ8N9B5 988 aa10.24□□□□□ -0.77
ZNF540-202ENST00000343599 N4BP2Q86UW6 1770 aaPredicted RBP10.24□□□□□ -0.77
ZNF540-202ENST00000343599 IP6K1Q92551 441 aa10.23□□□□□ -0.77
ZNF540-202ENST00000343599 LAMB2P55268 1798 aa10.22□□□□□ -0.77
ZNF540-202ENST00000343599 DDB1Q16531 1140 aa10.22□□□□□ -0.77
ZNF540-202ENST00000343599 CDCA8Q53HL2 280 aa10.22□□□□□ -0.77
ZNF540-202ENST00000343599 ERICH6BQ5W0A0 696 aa10.21□□□□□ -0.77
ZNF540-202ENST00000343599 IBTKQ9P2D0 1353 aaPredicted RBP10.21□□□□□ -0.77
ZNF540-202ENST00000343599 LRRC37AA6NMS7 1700 aa10.21□□□□□ -0.77
ZNF540-202ENST00000343599 SSFA2P28290 1259 aa10.2□□□□□ -0.78
ZNF540-202ENST00000343599 C1QTNF8P60827 252 aa10.2□□□□□ -0.78
ZNF540-202ENST00000343599 TGFB2P61812 414 aa10.2□□□□□ -0.78
ZNF540-202ENST00000343599 EZH2Q15910 746 aaKnown RBP10.2□□□□□ -0.78
ZNF540-202ENST00000343599 RBM46Q8TBY0 533 aaKnown RBP10.2□□□□□ -0.78
ZNF540-202ENST00000343599 GRIPAP1Q4V328 841 aa10.2□□□□□ -0.78
ZNF540-202ENST00000343599 NGDNQ8NEJ9 315 aaKnown RBP10.2□□□□□ -0.78
ZNF540-202ENST00000343599 YTHDC1Q96MU7 727 aaKnown RBP10.2□□□□□ -0.78
ZNF540-202ENST00000343599 CNTNAP4Q9C0A0 1308 aa10.2□□□□□ -0.78
ZNF540-202ENST00000343599 LTBP3Q9NS15 1303 aa10.2□□□□□ -0.78
ZNF540-202ENST00000343599 APBA3O96018 575 aa10.2□□□□□ -0.78
ZNF540-202ENST00000343599 YY1P25490 414 aa10.19□□□□□ -0.78
ZNF540-202ENST00000343599 ANKRD36CQ5JPF3 1778 aa10.19□□□□□ -0.78
ZNF540-202ENST00000343599 IL2RBP14784 551 aa10.18□□□□□ -0.78
ZNF540-202ENST00000343599 FAM98CQ17RN3 349 aaKnown RBP10.18□□□□□ -0.78
ZNF540-202ENST00000343599 APLP1P51693 650 aa10.18□□□□□ -0.78
ZNF540-202ENST00000343599 KTN1Q86UP2 1357 aaKnown RBP10.18□□□□□ -0.78
ZNF540-202ENST00000343599 AFDNP55196 1824 aaKnown RBP10.18□□□□□ -0.78
ZNF540-202ENST00000343599 CAPN2P17655 700 aa10.17□□□□□ -0.78
ZNF540-202ENST00000343599 TERF2IPQ9NYB0 399 aa10.17□□□□□ -0.78
ZNF540-202ENST00000343599 FLT4P35916 1363 aa10.17□□□□□ -0.78
ZNF540-202ENST00000343599 EXOC5O00471 708 aa10.17□□□□□ -0.78
ZNF540-202ENST00000343599 TXNRD1Q16881 649 aa10.17□□□□□ -0.78
ZNF540-202ENST00000343599 PCDH11XQ9BZA7 1347 aa10.17□□□□□ -0.78
ZNF540-202ENST00000343599 PCDH11YQ9BZA8 1340 aa10.17□□□□□ -0.78
ZNF540-202ENST00000343599 POLD1P28340 1107 aa10.16□□□□□ -0.78
ZNF540-202ENST00000343599 PSME4Q14997 1843 aa10.16□□□□□ -0.78
ZNF540-202ENST00000343599 EN1Q05925 392 aaPredicted RBP10.16□□□□□ -0.78
ZNF540-202ENST00000343599 ZNF316A6NFI3 1004 aaPredicted RBP10.15□□□□□ -0.78
ZNF540-202ENST00000343599 MARCH10Q8NA82 808 aaPredicted RBP10.15□□□□□ -0.78
ZNF540-202ENST00000343599 FOXD4L1Q9NU39 408 aa10.15□□□□□ -0.78
ZNF540-202ENST00000343599 HSP90AB1P08238 724 aaKnown RBP10.14□□□□□ -0.79
ZNF540-202ENST00000343599 PROM2Q8N271 834 aa10.14□□□□□ -0.79
ZNF540-202ENST00000343599 DDX17Q92841 729 aaKnown RBP10.14□□□□□ -0.79
ZNF540-202ENST00000343599 SENP3Q9H4L4 574 aaPredicted RBP10.14□□□□□ -0.79
ZNF540-202ENST00000343599 EVA1CP58658 441 aa10.13□□□□□ -0.79
ZNF540-202ENST00000343599 VPS33BQ9H267 617 aa10.13□□□□□ -0.79
ZNF540-202ENST00000343599 SALL2Q9Y467 1007 aaPredicted RBP10.13□□□□□ -0.79
ZNF540-202ENST00000343599 DEFB132Q7Z7B7 95 aa10.13□□□□□ -0.79
ZNF540-202ENST00000343599 TRPM7Q96QT4 1865 aa10.13□□□□□ -0.79
ZNF540-202ENST00000343599 HDGFL2Q7Z4V5 671 aaPredicted RBP10.13□□□□□ -0.79
ZNF540-202ENST00000343599 KDM3BQ7LBC6 1761 aa10.12□□□□□ -0.79
ZNF540-202ENST00000343599 PNPLA7Q6ZV29 1317 aa10.12□□□□□ -0.79
ZNF540-202ENST00000343599 LARP1Q6PKG0 1096 aaKnown RBP10.12□□□□□ -0.79
ZNF540-202ENST00000343599 MIER1Q8N108 512 aa10.12□□□□□ -0.79
ZNF540-202ENST00000343599 ABTB2Q8N961 1025 aa10.12□□□□□ -0.79
ZNF540-202ENST00000343599 LMOD2Q6P5Q4 547 aa10.11□□□□□ -0.79
ZNF540-202ENST00000343599 ZNF784Q8NCA9 323 aaPredicted RBP10.11□□□□□ -0.79
ZNF540-202ENST00000343599 SYT17Q9BSW7 474 aa10.11□□□□□ -0.79
ZNF540-202ENST00000343599 R3HDM1Q15032 1099 aaKnown RBP10.11□□□□□ -0.79
ZNF540-202ENST00000343599 MEGF6O75095 1541 aa10.11□□□□□ -0.79
ZNF540-202ENST00000343599 ERVV-2B6SEH9 535 aa10.1□□□□□ -0.79
ZNF540-202ENST00000343599 CCER1Q8TC90 406 aaPredicted RBP10.1□□□□□ -0.79
ZNF540-202ENST00000343599 ANKRD31Q8N7Z5 1873 aa10.1□□□□□ -0.79
ZNF540-202ENST00000343599 MMP14P50281 582 aa10.1□□□□□ -0.79
ZNF540-202ENST00000343599 KCPQ6ZWJ8 1503 aa10.09□□□□□ -0.79
ZNF540-202ENST00000343599 HSPA6P17066 643 aa10.09□□□□□ -0.79
ZNF540-202ENST00000343599 TMEM132EQ6IEE7 984 aa10.09□□□□□ -0.79
ZNF540-202ENST00000343599 RBM19Q9Y4C8 960 aaKnown RBP10.09□□□□□ -0.79
ZNF540-202ENST00000343599 TRIM37O94972 964 aa10.09□□□□□ -0.79
ZNF540-202ENST00000343599 NECTIN2Q92692 538 aa10.09□□□□□ -0.79
ZNF540-202ENST00000343599 CFAP44Q96MT7 982 aa10.09□□□□□ -0.79
ZNF540-202ENST00000343599 KAT6BQ8WYB5 2073 aa10.09□□□□□ -0.79
ZNF540-202ENST00000343599 WASHC2AQ641Q2 1341 aa10.08□□□□□ -0.8
ZNF540-202ENST00000343599 MSH5O43196 834 aa10.08□□□□□ -0.8
ZNF540-202ENST00000343599 ROCK2O75116 1388 aaKnown RBP10.07□□□□□ -0.8
ZNF540-202ENST00000343599 GIGYF1O75420 1035 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms