RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 IRX3P78415 501 aaPredicted RBP14.66□□□□□ -0.06
RTN3-203ENST00000341307 TSC1Q92574 1164 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 PDLIM2Q96JY6 352 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 KIF20BQ96Q89 1820 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 E9PSI1 815 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 MYRIPQ8NFW9 859 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 TNPO1Q92973 898 aaKnown RBP14.66□□□□□ -0.06
RTN3-203ENST00000341307 CHMP4AQ9BY43 222 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 UPF2Q9HAU5 1272 aaKnown RBP14.66□□□□□ -0.06
RTN3-203ENST00000341307 IQSEC2Q5JU85 1478 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 NCOA3Q9Y6Q9 1424 aa14.66□□□□□ -0.06
RTN3-203ENST00000341307 SKOR2Q2VWA4 1001 aaPredicted RBP14.65□□□□□ -0.06
RTN3-203ENST00000341307 CCDC61Q9Y6R9 512 aa14.65□□□□□ -0.06
RTN3-203ENST00000341307 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.65□□□□□ -0.06
RTN3-203ENST00000341307 PIP4K2BP78356 416 aa14.65□□□□□ -0.06
RTN3-203ENST00000341307 SLC20A2Q08357 652 aa14.65□□□□□ -0.06
RTN3-203ENST00000341307 CPSF1Q10570 1443 aaKnown RBP14.65□□□□□ -0.06
RTN3-203ENST00000341307 COL3A1P02461 1466 aaPredicted RBP14.64□□□□□ -0.07
RTN3-203ENST00000341307 BCAR3O75815 825 aa14.64□□□□□ -0.07
RTN3-203ENST00000341307 SIRT1Q96EB6 747 aa14.64□□□□□ -0.07
RTN3-203ENST00000341307 NKTRP30414 1462 aaKnown RBP14.64□□□□□ -0.07
RTN3-203ENST00000341307 DIP2AQ14689 1571 aa14.63□□□□□ -0.07
RTN3-203ENST00000341307 UBAP1LF5GYI3 381 aa14.63□□□□□ -0.07
RTN3-203ENST00000341307 PIK3R4Q99570 1358 aa14.63□□□□□ -0.07
RTN3-203ENST00000341307 IBTKQ9P2D0 1353 aaPredicted RBP14.63□□□□□ -0.07
RTN3-203ENST00000341307 POLKQ9UBT6 870 aa14.63□□□□□ -0.07
RTN3-203ENST00000341307 EMILIN1Q9Y6C2 1016 aa14.62□□□□□ -0.07
RTN3-203ENST00000341307 SPDYE4A6NLX3 237 aa14.62□□□□□ -0.07
RTN3-203ENST00000341307 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
RTN3-203ENST00000341307 XIRP1Q702N8 1843 aaKnown RBP14.62□□□□□ -0.07
RTN3-203ENST00000341307 DIAPH1O60610 1272 aaKnown RBP14.61□□□□□ -0.07
RTN3-203ENST00000341307 MCM5P33992 734 aa14.61□□□□□ -0.07
RTN3-203ENST00000341307 CERS3Q8IU89 383 aa14.61□□□□□ -0.07
RTN3-203ENST00000341307 PLEKHF1Q96S99 279 aa14.61□□□□□ -0.07
RTN3-203ENST00000341307 XRN1Q8IZH2 1706 aaKnown RBP14.61□□□□□ -0.07
RTN3-203ENST00000341307 EDC4Q6P2E9 1401 aaKnown RBP14.61□□□□□ -0.07
RTN3-203ENST00000341307 NWD1Q149M9 1564 aa14.61□□□□□ -0.07
RTN3-203ENST00000341307 CDC42BPGQ6DT37 1551 aa14.61□□□□□ -0.07
RTN3-203ENST00000341307 GTF2F1P35269 517 aaKnown RBP eCLIP14.6□□□□□ -0.073e-7■■■■■ 29.2
RTN3-203ENST00000341307 KCNJ4P48050 445 aa14.6□□□□□ -0.07
RTN3-203ENST00000341307 RRS1Q15050 365 aaKnown RBP14.6□□□□□ -0.07
RTN3-203ENST00000341307 NGEFQ8N5V2 710 aa14.6□□□□□ -0.07
RTN3-203ENST00000341307 GBP4Q96PP9 640 aa14.59□□□□□ -0.07
RTN3-203ENST00000341307 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.59□□□□□ -0.07
RTN3-203ENST00000341307 ACEP12821 1306 aa14.59□□□□□ -0.07
RTN3-203ENST00000341307 PNPLA6Q8IY17 1366 aa14.59□□□□□ -0.07
RTN3-203ENST00000341307 RAB3GAP1Q15042 981 aa14.58□□□□□ -0.07
RTN3-203ENST00000341307 ZNF771Q7L3S4 317 aaPredicted RBP14.58□□□□□ -0.07
RTN3-203ENST00000341307 DNAJC2Q99543 621 aaKnown RBP14.58□□□□□ -0.07
RTN3-203ENST00000341307 C19orf44Q9H6X5 657 aa14.58□□□□□ -0.07
RTN3-203ENST00000341307 MAP2P11137 1827 aaKnown RBP14.58□□□□□ -0.08
RTN3-203ENST00000341307 PMFBP1Q8TBY8 1022 aa14.58□□□□□ -0.08
RTN3-203ENST00000341307 DDX17Q92841 729 aaKnown RBP14.58□□□□□ -0.08
RTN3-203ENST00000341307 HMOX1P09601 288 aa14.57□□□□□ -0.08
RTN3-203ENST00000341307 COG3Q96JB2 828 aa14.57□□□□□ -0.08
RTN3-203ENST00000341307 MON2Q7Z3U7 1717 aa14.57□□□□□ -0.08
RTN3-203ENST00000341307 TMPOP42166 694 aaKnown RBP14.57□□□□□ -0.08
RTN3-203ENST00000341307 ADGRB2O60241 1585 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 ITSN1Q15811 1721 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 FAM177BA6PVY3 158 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 PTMSP20962 102 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 BCL2L13Q9BXK5 485 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 SOX12O15370 315 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 HSP90AB1P08238 724 aaKnown RBP14.56□□□□□ -0.08
RTN3-203ENST00000341307 ZNF445P59923 1031 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 CCDC27Q2M243 656 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 WDR63Q8IWG1 891 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 TSR2Q969E8 191 aaKnown RBP14.56□□□□□ -0.08
RTN3-203ENST00000341307 C22orf23Q9BZE7 217 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 RBSNQ9H1K0 784 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 TRIM35Q9UPQ4 493 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 MSH6P52701 1360 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 PTCH1Q13635 1447 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 AKAP12Q02952 1782 aa14.56□□□□□ -0.08
RTN3-203ENST00000341307 ATF3P18847 181 aa14.55□□□□□ -0.08
RTN3-203ENST00000341307 ORAI2Q96SN7 254 aa14.55□□□□□ -0.08
RTN3-203ENST00000341307 SLAIN2Q9P270 581 aa14.55□□□□□ -0.08
RTN3-203ENST00000341307 RBM25P49756 843 aaKnown RBP14.55□□□□□ -0.08
RTN3-203ENST00000341307 HSCBQ8IWL3 235 aa14.55□□□□□ -0.08
RTN3-203ENST00000341307 PRKAR2BP31323 418 aa14.54□□□□□ -0.08
RTN3-203ENST00000341307 KLHL40Q2TBA0 621 aa14.54□□□□□ -0.08
RTN3-203ENST00000341307 PRIMPOLQ96LW4 560 aa14.54□□□□□ -0.08
RTN3-203ENST00000341307 TTC21BQ7Z4L5 1316 aa14.54□□□□□ -0.08
RTN3-203ENST00000341307 HMGN5P82970 282 aaKnown RBP14.54□□□□□ -0.08
RTN3-203ENST00000341307 ILDR1Q86SU0 546 aaPredicted RBP14.54□□□□□ -0.08
RTN3-203ENST00000341307 CIZ1Q9ULV3 898 aaPredicted RBP14.54□□□□□ -0.08
RTN3-203ENST00000341307 NALCNQ8IZF0 1738 aa14.53□□□□□ -0.08
RTN3-203ENST00000341307 TOM1O60784 492 aa14.53□□□□□ -0.08
RTN3-203ENST00000341307 CAPN2P17655 700 aa14.53□□□□□ -0.08
RTN3-203ENST00000341307 U2AF2P26368 475 aaKnown RBP eCLIP14.53□□□□□ -0.083e-6■■■□□ 15.2
RTN3-203ENST00000341307 SMC5Q8IY18 1101 aa14.53□□□□□ -0.08
RTN3-203ENST00000341307 PHACTR3Q96KR7 559 aa14.53□□□□□ -0.08
RTN3-203ENST00000341307 BCL2L12Q9HB09 334 aa14.53□□□□□ -0.08
RTN3-203ENST00000341307 AEBP1Q8IUX7 1158 aa14.53□□□□□ -0.08
RTN3-203ENST00000341307 TOPAZ1Q8N9V7 1692 aa14.53□□□□□ -0.08
RTN3-203ENST00000341307 PLEKHG3A1L390 1219 aa14.52□□□□□ -0.08
RTN3-203ENST00000341307 PDCL2Q8N4E4 241 aa14.52□□□□□ -0.08
RTN3-203ENST00000341307 CCDC39Q9UFE4 941 aa14.52□□□□□ -0.08
RTN3-203ENST00000341307 ADGRL3Q9HAR2 1447 aa14.52□□□□□ -0.08
RTN3-203ENST00000341307 RGPD8O14715 1765 aaPredicted RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms