RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 COG6Q9Y2V7 657 aa17.2■□□□□ 0.34
HMGB1-202ENST00000339872 NHSL1Q5SYE7 1610 aa17.2■□□□□ 0.34
HMGB1-202ENST00000339872 COL18A1P39060 1754 aa17.2■□□□□ 0.34
HMGB1-202ENST00000339872 MAP3K5Q99683 1374 aa17.2■□□□□ 0.34
HMGB1-202ENST00000339872 SOS2Q07890 1332 aaPredicted RBP17.2■□□□□ 0.34
HMGB1-202ENST00000339872 GNAT3A8MTJ3 354 aa17.2■□□□□ 0.34
HMGB1-202ENST00000339872 ALDH1L2Q3SY69 923 aa17.2■□□□□ 0.34
HMGB1-202ENST00000339872 ZNF428Q96B54 188 aa17.2■□□□□ 0.34
HMGB1-202ENST00000339872 NCAPD2Q15021 1401 aa17.19■□□□□ 0.34
HMGB1-202ENST00000339872 ELL2O00472 640 aaPredicted RBP17.19■□□□□ 0.34
HMGB1-202ENST00000339872 TWISTNBQ3B726 338 aaPredicted RBP17.19■□□□□ 0.34
HMGB1-202ENST00000339872 CLUAP1Q96AJ1 413 aa17.19■□□□□ 0.34
HMGB1-202ENST00000339872 ERBB3P21860 1342 aa17.19■□□□□ 0.34
HMGB1-202ENST00000339872 CHL1O00533 1208 aa17.19■□□□□ 0.34
HMGB1-202ENST00000339872 HTATSF1O43719 755 aaKnown RBP17.19■□□□□ 0.34
HMGB1-202ENST00000339872 VAMP4O75379 141 aa17.19■□□□□ 0.34
HMGB1-202ENST00000339872 RLBP1P12271 317 aa17.19■□□□□ 0.34
HMGB1-202ENST00000339872 KIF16BQ96L93 1317 aa17.18■□□□□ 0.34
HMGB1-202ENST00000339872 C8orf58Q8NAV2 365 aa17.18■□□□□ 0.34
HMGB1-202ENST00000339872 TSHZ2Q9NRE2 1034 aa17.18■□□□□ 0.34
HMGB1-202ENST00000339872 LMO7Q8WWI1 1683 aa17.17■□□□□ 0.34
HMGB1-202ENST00000339872 ABCC6O95255 1503 aa17.17■□□□□ 0.34
HMGB1-202ENST00000339872 FTSJ3Q8IY81 847 aaKnown RBP17.17■□□□□ 0.34
HMGB1-202ENST00000339872 ABCA3Q99758 1704 aa17.17■□□□□ 0.34
HMGB1-202ENST00000339872 NOB1Q9ULX3 412 aaKnown RBP17.16■□□□□ 0.34
HMGB1-202ENST00000339872 KIAA0232Q92628 1395 aa17.16■□□□□ 0.34
HMGB1-202ENST00000339872 FAM208AQ9UK61 1670 aaKnown RBP17.16■□□□□ 0.34
HMGB1-202ENST00000339872 TRIM27P14373 513 aa17.16■□□□□ 0.34
HMGB1-202ENST00000339872 DZIP1LQ8IYY4 767 aaKnown RBP17.16■□□□□ 0.34
HMGB1-202ENST00000339872 MS4A1P11836 297 aa17.15■□□□□ 0.34
HMGB1-202ENST00000339872 CHRNA2Q15822 529 aa17.15■□□□□ 0.34
HMGB1-202ENST00000339872 ATF7IPQ6VMQ6 1270 aa17.15■□□□□ 0.34
HMGB1-202ENST00000339872 MIS18AQ9NYP9 233 aa17.15■□□□□ 0.34
HMGB1-202ENST00000339872 TSPYL4Q9UJ04 414 aa17.15■□□□□ 0.34
HMGB1-202ENST00000339872 CPDO75976 1380 aa17.15■□□□□ 0.34
HMGB1-202ENST00000339872 KRT24Q2M2I5 525 aa17.14■□□□□ 0.33
HMGB1-202ENST00000339872 VIRMAQ69YN4 1812 aaKnown RBP17.13■□□□□ 0.33
HMGB1-202ENST00000339872 TCERG1O14776 1098 aaKnown RBP17.13■□□□□ 0.33
HMGB1-202ENST00000339872 IPO8O15397 1037 aaKnown RBP17.13■□□□□ 0.33
HMGB1-202ENST00000339872 PLEKHO1Q53GL0 409 aaPredicted RBP17.13■□□□□ 0.33
HMGB1-202ENST00000339872 IL17REQ8NFR9 667 aa17.13■□□□□ 0.33
HMGB1-202ENST00000339872 LTBP4Q8N2S1 1624 aa17.13■□□□□ 0.33
HMGB1-202ENST00000339872 BRPF1P55201 1214 aaPredicted RBP17.13■□□□□ 0.33
HMGB1-202ENST00000339872 MVPQ14764 893 aaKnown RBP17.13■□□□□ 0.33
HMGB1-202ENST00000339872 MRPL50Q8N5N7 158 aaKnown RBP17.13■□□□□ 0.33
HMGB1-202ENST00000339872 NLRP2Q9NX02 1062 aa17.13■□□□□ 0.33
HMGB1-202ENST00000339872 ROBO1Q9Y6N7 1651 aa17.12■□□□□ 0.33
HMGB1-202ENST00000339872 CSB-PGBD3P0DP91 1061 aa17.12■□□□□ 0.33
HMGB1-202ENST00000339872 HAP1P54257 671 aaPredicted RBP17.12■□□□□ 0.33
HMGB1-202ENST00000339872 ZNF530Q6P9A1 599 aaPredicted RBP17.12■□□□□ 0.33
HMGB1-202ENST00000339872 AMOTQ4VCS5 1084 aa17.12■□□□□ 0.33
HMGB1-202ENST00000339872 KDM2BQ8NHM5 1336 aa17.11■□□□□ 0.33
HMGB1-202ENST00000339872 CENPQQ7L2Z9 268 aaPredicted RBP17.1■□□□□ 0.33
HMGB1-202ENST00000339872 AKAP4Q5JQC9 854 aa17.1■□□□□ 0.33
HMGB1-202ENST00000339872 PRDM11Q9NQV5 511 aa17.1■□□□□ 0.33
HMGB1-202ENST00000339872 CEMIPQ8WUJ3 1361 aa17.1■□□□□ 0.33
HMGB1-202ENST00000339872 AAMPQ13685 434 aa17.09■□□□□ 0.33
HMGB1-202ENST00000339872 ITPRIPQ8IWB1 547 aa17.09■□□□□ 0.33
HMGB1-202ENST00000339872 C1orf141Q5JVX7 400 aa17.09■□□□□ 0.33
HMGB1-202ENST00000339872 TAF7Q15545 349 aaPredicted RBP17.08■□□□□ 0.33
HMGB1-202ENST00000339872 TMEM57Q8N5G2 664 aa17.08■□□□□ 0.33
HMGB1-202ENST00000339872 RAPGEF4Q8WZA2 1011 aa17.08■□□□□ 0.33
HMGB1-202ENST00000339872 LGR6Q9HBX8 967 aa17.07■□□□□ 0.32
HMGB1-202ENST00000339872 DDX19BQ9UMR2 479 aa17.07■□□□□ 0.32
HMGB1-202ENST00000339872 ARHGAP45Q92619 1136 aa17.07■□□□□ 0.32
HMGB1-202ENST00000339872 MEGF6O75095 1541 aa17.06■□□□□ 0.32
HMGB1-202ENST00000339872 KDM3BQ7LBC6 1761 aa17.06■□□□□ 0.32
HMGB1-202ENST00000339872 MPRIPQ6WCQ1 1025 aa17.06■□□□□ 0.32
HMGB1-202ENST00000339872 BABAM1Q9NWV8 329 aa17.06■□□□□ 0.32
HMGB1-202ENST00000339872 TATP17735 454 aaPredicted RBP17.05■□□□□ 0.32
HMGB1-202ENST00000339872 AHDC1Q5TGY3 1603 aaPredicted RBP17.05■□□□□ 0.32
HMGB1-202ENST00000339872 TEFQ10587 303 aa17.04■□□□□ 0.32
HMGB1-202ENST00000339872 COL5A2P05997 1499 aaPredicted RBP17.04■□□□□ 0.32
HMGB1-202ENST00000339872 OVOS2A0A0G2JMS6 1433 aa17.04■□□□□ 0.32
HMGB1-202ENST00000339872 IGHDP01880 384 aa17.04■□□□□ 0.32
HMGB1-202ENST00000339872 RNMTO43148 476 aaKnown RBP17.03■□□□□ 0.32
HMGB1-202ENST00000339872 PCDHB15Q9Y5E8 787 aa17.03■□□□□ 0.32
HMGB1-202ENST00000339872 PKD1L3Q7Z443 1732 aa17.03■□□□□ 0.32
HMGB1-202ENST00000339872 ADAMTS7Q9UKP4 1686 aa17.03■□□□□ 0.32
HMGB1-202ENST00000339872 API5Q9BZZ5 524 aaKnown RBP17.03■□□□□ 0.32
HMGB1-202ENST00000339872 SIPA1L3O60292 1781 aaPredicted RBP17.02■□□□□ 0.32
HMGB1-202ENST00000339872 ABCC4O15439 1325 aa17.02■□□□□ 0.32
HMGB1-202ENST00000339872 WDR17Q8IZU2 1322 aa17.02■□□□□ 0.32
HMGB1-202ENST00000339872 SKAP1Q86WV1 359 aa17.02■□□□□ 0.32
HMGB1-202ENST00000339872 PARP4Q9UKK3 1724 aaKnown RBP17.02■□□□□ 0.32
HMGB1-202ENST00000339872 SCN11AQ9UI33 1791 aa17.02■□□□□ 0.31
HMGB1-202ENST00000339872 SPG7Q9UQ90 795 aa17.02■□□□□ 0.31
HMGB1-202ENST00000339872 TOM1L2Q6ZVM7 507 aa17.01■□□□□ 0.31
HMGB1-202ENST00000339872 PLEKHG2Q9H7P9 1386 aa17■□□□□ 0.31
HMGB1-202ENST00000339872 BTBD11A6QL63 1104 aa17■□□□□ 0.31
HMGB1-202ENST00000339872 SLC4A2P04920 1241 aa17■□□□□ 0.31
HMGB1-202ENST00000339872 COL22A1Q8NFW1 1626 aaPredicted RBP17■□□□□ 0.31
HMGB1-202ENST00000339872 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.99■□□□□ 0.316e-7■■□□□ 13.1
HMGB1-202ENST00000339872 SOS1Q07889 1333 aaPredicted RBP16.99■□□□□ 0.31
HMGB1-202ENST00000339872 RGS12O14924 1447 aa16.99■□□□□ 0.31
HMGB1-202ENST00000339872 PHLPP1O60346 1717 aa16.99■□□□□ 0.31
HMGB1-202ENST00000339872 STK31Q9BXU1 1019 aa16.99■□□□□ 0.31
HMGB1-202ENST00000339872 PTPRCP08575 1304 aa16.99■□□□□ 0.31
HMGB1-202ENST00000339872 PHKG2P15735 406 aa16.98■□□□□ 0.31
HMGB1-202ENST00000339872 NECTIN2Q92692 538 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms