RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 CD163L1Q9NR16 1453 aa13.93□□□□□ -0.18
RTN3-201ENST00000338850 PARP4Q9UKK3 1724 aaKnown RBP13.93□□□□□ -0.18
RTN3-201ENST00000338850 NFAT5O94916 1531 aa13.92□□□□□ -0.18
RTN3-201ENST00000338850 APBA3O96018 575 aa13.92□□□□□ -0.18
RTN3-201ENST00000338850 CT47B1P0C2W7 299 aaPredicted RBP13.92□□□□□ -0.18
RTN3-201ENST00000338850 WDR63Q8IWG1 891 aa13.92□□□□□ -0.18
RTN3-201ENST00000338850 SALL2Q9Y467 1007 aaPredicted RBP13.92□□□□□ -0.18
RTN3-201ENST00000338850 WDR17Q8IZU2 1322 aa13.91□□□□□ -0.18
RTN3-201ENST00000338850 LRP5O75197 1615 aa13.91□□□□□ -0.18
RTN3-201ENST00000338850 MON2Q7Z3U7 1717 aa13.91□□□□□ -0.18
RTN3-201ENST00000338850 PPM1GO15355 546 aaPredicted RBP13.91□□□□□ -0.18
RTN3-201ENST00000338850 SOX12O15370 315 aa13.91□□□□□ -0.18
RTN3-201ENST00000338850 TOM1L2Q6ZVM7 507 aa13.91□□□□□ -0.18
RTN3-201ENST00000338850 USP31Q70CQ4 1352 aa13.91□□□□□ -0.18
RTN3-201ENST00000338850 COL3A1P02461 1466 aaPredicted RBP13.91□□□□□ -0.18
RTN3-201ENST00000338850 APAF1O14727 1248 aa13.9□□□□□ -0.18
RTN3-201ENST00000338850 R3HDM1Q15032 1099 aaKnown RBP13.9□□□□□ -0.18
RTN3-201ENST00000338850 FAM161AQ3B820 660 aa13.9□□□□□ -0.18
RTN3-201ENST00000338850 RUNDC1Q96C34 613 aa13.9□□□□□ -0.18
RTN3-201ENST00000338850 PLIN1O60240 522 aa13.89□□□□□ -0.19
RTN3-201ENST00000338850 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.89□□□□□ -0.19
RTN3-201ENST00000338850 CFAP53Q96M91 514 aa13.89□□□□□ -0.19
RTN3-201ENST00000338850 SLC12A5Q9H2X9 1139 aa13.89□□□□□ -0.19
RTN3-201ENST00000338850 LRRC37A3O60309 1634 aa13.89□□□□□ -0.19
RTN3-201ENST00000338850 OVOS2A0A0G2JMS6 1433 aa13.89□□□□□ -0.19
RTN3-201ENST00000338850 OVOS2A0A0J9YW53 1432 aa13.89□□□□□ -0.19
RTN3-201ENST00000338850 OVOS2Q6IE36 1432 aa13.89□□□□□ -0.19
RTN3-201ENST00000338850 PEAK1Q9H792 1746 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 DDB1Q16531 1140 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 C20orf194Q5TEA3 1177 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 NME9Q86XW9 330 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 WWC1Q8IX03 1113 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 CARD10Q9BWT7 1032 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 ABCC6O95255 1503 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 USP54Q70EL1 1684 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 MAPK8IP3Q9UPT6 1336 aa13.88□□□□□ -0.19
RTN3-201ENST00000338850 RTL5Q5HYW3 569 aaPredicted RBP13.87□□□□□ -0.19
RTN3-201ENST00000338850 HDGFL2Q7Z4V5 671 aaPredicted RBP13.87□□□□□ -0.19
RTN3-201ENST00000338850 MORC1Q86VD1 984 aa13.87□□□□□ -0.19
RTN3-201ENST00000338850 CDCA7Q9BWT1 371 aaPredicted RBP13.87□□□□□ -0.19
RTN3-201ENST00000338850 EDC4Q6P2E9 1401 aaKnown RBP13.87□□□□□ -0.19
RTN3-201ENST00000338850 A0A1W2PP64 1363 aa13.86□□□□□ -0.19
RTN3-201ENST00000338850 RREB1Q92766 1687 aa13.86□□□□□ -0.19
RTN3-201ENST00000338850 CSB-PGBD3P0DP91 1061 aa13.86□□□□□ -0.19
RTN3-201ENST00000338850 BCL11AQ9H165 835 aa13.86□□□□□ -0.19
RTN3-201ENST00000338850 SENP3-EIF4A1A0A087X0R7 540 aa13.85□□□□□ -0.19
RTN3-201ENST00000338850 MARCH10Q8NA82 808 aaPredicted RBP13.85□□□□□ -0.19
RTN3-201ENST00000338850 TERF2IPQ9NYB0 399 aa13.85□□□□□ -0.19
RTN3-201ENST00000338850 RGPD5Q99666 1765 aa13.85□□□□□ -0.19
RTN3-201ENST00000338850 WNK3Q9BYP7 1800 aa13.85□□□□□ -0.19
RTN3-201ENST00000338850 C8orf34Q49A92 452 aa13.84□□□□□ -0.19
RTN3-201ENST00000338850 NUP188Q5SRE5 1749 aa13.84□□□□□ -0.19
RTN3-201ENST00000338850 BCL9O00512 1426 aa13.83□□□□□ -0.2
RTN3-201ENST00000338850 DEKP35659 375 aaKnown RBP13.83□□□□□ -0.2
RTN3-201ENST00000338850 SPINK5Q9NQ38 1064 aaPredicted RBP13.83□□□□□ -0.2
RTN3-201ENST00000338850 ERBB3P21860 1342 aa13.83□□□□□ -0.2
RTN3-201ENST00000338850 IL16Q14005 1332 aa13.83□□□□□ -0.2
RTN3-201ENST00000338850 PTF1AQ7RTS3 328 aa13.82□□□□□ -0.2
RTN3-201ENST00000338850 CCDC146Q8IYE0 955 aa13.82□□□□□ -0.2
RTN3-201ENST00000338850 CLUAP1Q96AJ1 413 aa13.82□□□□□ -0.2
RTN3-201ENST00000338850 PLSCR1O15162 318 aa13.81□□□□□ -0.2
RTN3-201ENST00000338850 NBPF14Q5TI25 921 aa13.81□□□□□ -0.2
RTN3-201ENST00000338850 BCL11BQ9C0K0 894 aaPredicted RBP13.81□□□□□ -0.2
RTN3-201ENST00000338850 MYH16Q9H6N6 1097 aa13.81□□□□□ -0.2
RTN3-201ENST00000338850 TNS2Q63HR2 1409 aa13.81□□□□□ -0.2
RTN3-201ENST00000338850 SBF2Q86WG5 1849 aa13.8□□□□□ -0.2
RTN3-201ENST00000338850 EXOC5O00471 708 aa13.8□□□□□ -0.2
RTN3-201ENST00000338850 NLRP2Q9NX02 1062 aa13.8□□□□□ -0.2
RTN3-201ENST00000338850 RGPD3A6NKT7 1758 aaPredicted RBP13.79□□□□□ -0.2
RTN3-201ENST00000338850 RGPD4Q7Z3J3 1758 aa13.79□□□□□ -0.2
RTN3-201ENST00000338850 RARSP54136 660 aaKnown RBP13.79□□□□□ -0.2
RTN3-201ENST00000338850 ANKRD24Q8TF21 1146 aa13.79□□□□□ -0.2
RTN3-201ENST00000338850 LTN1O94822 1766 aa13.78□□□□□ -0.2
RTN3-201ENST00000338850 MTHFSP49914 203 aa13.77□□□□□ -0.21
RTN3-201ENST00000338850 PROM2Q8N271 834 aa13.77□□□□□ -0.21
RTN3-201ENST00000338850 IP6K1Q92551 441 aa13.77□□□□□ -0.21
RTN3-201ENST00000338850 PNNQ9H307 717 aaKnown RBP13.77□□□□□ -0.21
RTN3-201ENST00000338850 BCAR3O75815 825 aa13.76□□□□□ -0.21
RTN3-201ENST00000338850 IL2RBP14784 551 aa13.76□□□□□ -0.21
RTN3-201ENST00000338850 COG3Q96JB2 828 aa13.76□□□□□ -0.21
RTN3-201ENST00000338850 ANO8Q9HCE9 1232 aaPredicted RBP13.76□□□□□ -0.21
RTN3-201ENST00000338850 MAP3K19Q56UN5 1328 aa13.75□□□□□ -0.21
RTN3-201ENST00000338850 ZNF428Q96B54 188 aa13.75□□□□□ -0.21
RTN3-201ENST00000338850 KCNQ2O43526 872 aa13.74□□□□□ -0.21
RTN3-201ENST00000338850 NPM2Q86SE8 214 aaKnown RBP13.74□□□□□ -0.21
RTN3-201ENST00000338850 FBLN1P23142 703 aa13.73□□□□□ -0.21
RTN3-201ENST00000338850 HOXC9P31274 260 aa13.73□□□□□ -0.21
RTN3-201ENST00000338850 BRPF1P55201 1214 aaPredicted RBP13.73□□□□□ -0.21
RTN3-201ENST00000338850 TXNRD1Q16881 649 aa13.73□□□□□ -0.21
RTN3-201ENST00000338850 PLEKHF1Q96S99 279 aa13.73□□□□□ -0.21
RTN3-201ENST00000338850 NHSQ6T4R5 1651 aa13.72□□□□□ -0.21
RTN3-201ENST00000338850 FYB1O15117 783 aa13.72□□□□□ -0.21
RTN3-201ENST00000338850 NBR1Q14596 966 aa13.72□□□□□ -0.21
RTN3-201ENST00000338850 LTV1Q96GA3 475 aaPredicted RBP13.72□□□□□ -0.21
RTN3-201ENST00000338850 ACSBG1Q96GR2 724 aa13.72□□□□□ -0.21
RTN3-201ENST00000338850 SPON1Q9HCB6 807 aa13.72□□□□□ -0.21
RTN3-201ENST00000338850 CANXP27824 592 aaKnown RBP13.71□□□□□ -0.21
RTN3-201ENST00000338850 AMPHP49418 695 aa13.71□□□□□ -0.21
RTN3-201ENST00000338850 GGNBP2Q9H3C7 697 aa13.71□□□□□ -0.21
RTN3-201ENST00000338850 FAM208AQ9UK61 1670 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms