RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 GNAI1P63096 354 aa19.42■□□□□ 0.7
CCDC88C-202ENST00000334448 NLRP2Q9NX02 1062 aa19.42■□□□□ 0.7
CCDC88C-202ENST00000334448 MEGF6O75095 1541 aa19.41■□□□□ 0.7
CCDC88C-202ENST00000334448 GNAT3A8MTJ3 354 aa19.41■□□□□ 0.7
CCDC88C-202ENST00000334448 CSB-PGBD3P0DP91 1061 aa19.41■□□□□ 0.7
CCDC88C-202ENST00000334448 CFAP44Q96MT7 982 aa19.41■□□□□ 0.7
CCDC88C-202ENST00000334448 GTF3C3Q9Y5Q9 886 aa19.41■□□□□ 0.7
CCDC88C-202ENST00000334448 CEMIPQ8WUJ3 1361 aa19.41■□□□□ 0.7
CCDC88C-202ENST00000334448 ADAMTS7Q9UKP4 1686 aa19.4■□□□□ 0.7
CCDC88C-202ENST00000334448 PKD1L3Q7Z443 1732 aa19.39■□□□□ 0.7
CCDC88C-202ENST00000334448 AKAP4Q5JQC9 854 aa19.39■□□□□ 0.69
CCDC88C-202ENST00000334448 RAPGEF4Q8WZA2 1011 aa19.39■□□□□ 0.69
CCDC88C-202ENST00000334448 RTF1Q92541 710 aaKnown RBP19.39■□□□□ 0.69
CCDC88C-202ENST00000334448 BABAM1Q9NWV8 329 aa19.39■□□□□ 0.69
CCDC88C-202ENST00000334448 TATP17735 454 aaPredicted RBP19.38■□□□□ 0.69
CCDC88C-202ENST00000334448 SPATA31A6Q5VVP1 1343 aa19.38■□□□□ 0.69
CCDC88C-202ENST00000334448 THUMPD2Q9BTF0 503 aaKnown RBP19.38■□□□□ 0.69
CCDC88C-202ENST00000334448 SLIT2O94813 1529 aa19.37■□□□□ 0.69
CCDC88C-202ENST00000334448 CHL1O00533 1208 aa19.37■□□□□ 0.69
CCDC88C-202ENST00000334448 NEFLP07196 543 aa19.37■□□□□ 0.69
CCDC88C-202ENST00000334448 RRP1P56182 461 aaKnown RBP19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 ERICH6BQ5W0A0 696 aa19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 ZNF530Q6P9A1 599 aaPredicted RBP19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 ZNF428Q96B54 188 aa19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 BTG4Q9NY30 223 aa19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 NRAPQ86VF7 1730 aa19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 PARP4Q9UKK3 1724 aaKnown RBP19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 NWD2Q9ULI1 1742 aa19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 PLCH1Q4KWH8 1693 aa19.36■□□□□ 0.69
CCDC88C-202ENST00000334448 DCTN1Q14203 1278 aa19.35■□□□□ 0.69
CCDC88C-202ENST00000334448 TOM1L2Q6ZVM7 507 aa19.35■□□□□ 0.69
CCDC88C-202ENST00000334448 MCM10Q7L590 875 aa19.35■□□□□ 0.69
CCDC88C-202ENST00000334448 TSR2Q969E8 191 aaKnown RBP19.35■□□□□ 0.69
CCDC88C-202ENST00000334448 DISP2A7MBM2 1401 aa19.34■□□□□ 0.69
CCDC88C-202ENST00000334448 LARP1Q6PKG0 1096 aaKnown RBP19.34■□□□□ 0.69
CCDC88C-202ENST00000334448 IL17REQ8NFR9 667 aa19.34■□□□□ 0.69
CCDC88C-202ENST00000334448 MBIPQ9NS73 344 aa19.34■□□□□ 0.69
CCDC88C-202ENST00000334448 SPG7Q9UQ90 795 aa19.34■□□□□ 0.69
CCDC88C-202ENST00000334448 EVA1CP58658 441 aa19.32■□□□□ 0.68
CCDC88C-202ENST00000334448 EXOSC9Q06265 439 aaKnown RBP19.32■□□□□ 0.68
CCDC88C-202ENST00000334448 C1orf141Q5JVX7 400 aa19.32■□□□□ 0.68
CCDC88C-202ENST00000334448 MRC1P22897 1456 aa19.31■□□□□ 0.68
CCDC88C-202ENST00000334448 RARSP54136 660 aaKnown RBP19.31■□□□□ 0.68
CCDC88C-202ENST00000334448 IL2RBP14784 551 aa19.3■□□□□ 0.68
CCDC88C-202ENST00000334448 PHKG2P15735 406 aa19.3■□□□□ 0.68
CCDC88C-202ENST00000334448 STRN4Q9NRL3 753 aa19.3■□□□□ 0.68
CCDC88C-202ENST00000334448 SOS1Q07889 1333 aaPredicted RBP19.29■□□□□ 0.68
CCDC88C-202ENST00000334448 IFNL2Q8IZJ0 200 aa19.29■□□□□ 0.68
CCDC88C-202ENST00000334448 LRP6O75581 1613 aa19.29■□□□□ 0.68
CCDC88C-202ENST00000334448 KDM6AO15550 1401 aaPredicted RBP19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 RNMTO43148 476 aaKnown RBP19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 ADAMTS2O95450 1211 aa19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 HSP90AB1P08238 724 aaKnown RBP19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 HSPA1LP34931 641 aa19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 BRPF1P55201 1214 aaPredicted RBP19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 TAF7Q15545 349 aaPredicted RBP19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 THRAP3Q9Y2W1 955 aaKnown RBP19.28■□□□□ 0.68
CCDC88C-202ENST00000334448 PCDH11XQ9BZA7 1347 aa19.27■□□□□ 0.68
CCDC88C-202ENST00000334448 PCDH11YQ9BZA8 1340 aa19.27■□□□□ 0.68
CCDC88C-202ENST00000334448 CYP27B1O15528 508 aa19.27■□□□□ 0.68
CCDC88C-202ENST00000334448 FKBP8Q14318 412 aa19.27■□□□□ 0.68
CCDC88C-202ENST00000334448 ALDH1L2Q3SY69 923 aa19.27■□□□□ 0.68
CCDC88C-202ENST00000334448 CDCA7Q9BWT1 371 aaPredicted RBP19.27■□□□□ 0.68
CCDC88C-202ENST00000334448 NKX1-1Q15270 411 aaPredicted RBP19.26■□□□□ 0.67
CCDC88C-202ENST00000334448 FNBP4Q8N3X1 1017 aaPredicted RBP19.26■□□□□ 0.67
CCDC88C-202ENST00000334448 ZCRB1Q8TBF4 217 aaKnown RBP19.26■□□□□ 0.67
CCDC88C-202ENST00000334448 LAS1LQ9Y4W2 734 aaKnown RBP19.26■□□□□ 0.67
CCDC88C-202ENST00000334448 SPATA31A1Q5TZJ5 1347 aa19.25■□□□□ 0.67
CCDC88C-202ENST00000334448 VAMP4O75379 141 aa19.25■□□□□ 0.67
CCDC88C-202ENST00000334448 DCAF5Q96JK2 942 aa19.25■□□□□ 0.67
CCDC88C-202ENST00000334448 LGR6Q9HBX8 967 aa19.25■□□□□ 0.67
CCDC88C-202ENST00000334448 TSPYL4Q9UJ04 414 aa19.25■□□□□ 0.67
CCDC88C-202ENST00000334448 WNK3Q9BYP7 1800 aa19.25■□□□□ 0.67
CCDC88C-202ENST00000334448 SPATA31A5Q5VU36 1347 aa19.25■□□□□ 0.67
CCDC88C-202ENST00000334448 SPATA31A7Q8IWB4 1347 aa19.25■□□□□ 0.67
CCDC88C-202ENST00000334448 BCL9LQ86UU0 1499 aa19.24■□□□□ 0.67
CCDC88C-202ENST00000334448 NUTM2BA6NNL0 878 aaPredicted RBP19.24■□□□□ 0.67
CCDC88C-202ENST00000334448 NUTM2EB1AL46 878 aaPredicted RBP19.24■□□□□ 0.67
CCDC88C-202ENST00000334448 NUTM2AQ8IVF1 878 aaPredicted RBP19.24■□□□□ 0.67
CCDC88C-202ENST00000334448 SHANK3Q9BYB0 1731 aa19.24■□□□□ 0.67
CCDC88C-202ENST00000334448 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.24■□□□□ 0.67
CCDC88C-202ENST00000334448 SIPA1L3O60292 1781 aaPredicted RBP19.24■□□□□ 0.67
CCDC88C-202ENST00000334448 KDM3BQ7LBC6 1761 aa19.24■□□□□ 0.67
CCDC88C-202ENST00000334448 TEFQ10587 303 aa19.23■□□□□ 0.67
CCDC88C-202ENST00000334448 TWISTNBQ3B726 338 aaPredicted RBP19.23■□□□□ 0.67
CCDC88C-202ENST00000334448 MPRIPQ6WCQ1 1025 aa19.23■□□□□ 0.67
CCDC88C-202ENST00000334448 SCN11AQ9UI33 1791 aa19.23■□□□□ 0.67
CCDC88C-202ENST00000334448 TNS2Q63HR2 1409 aa19.23■□□□□ 0.67
CCDC88C-202ENST00000334448 BCAR3O75815 825 aa19.22■□□□□ 0.67
CCDC88C-202ENST00000334448 BARGINQ6ZT62 677 aa19.22■□□□□ 0.67
CCDC88C-202ENST00000334448 UNC5CLQ8IV45 518 aa19.22■□□□□ 0.67
CCDC88C-202ENST00000334448 C8orf58Q8NAV2 365 aa19.22■□□□□ 0.67
CCDC88C-202ENST00000334448 PDE3AQ14432 1141 aa19.21■□□□□ 0.67
CCDC88C-202ENST00000334448 VPS72Q15906 364 aa19.21■□□□□ 0.67
CCDC88C-202ENST00000334448 TSPYL6Q8N831 410 aa19.21■□□□□ 0.67
CCDC88C-202ENST00000334448 SSH1Q8WYL5 1049 aa19.21■□□□□ 0.67
CCDC88C-202ENST00000334448 HOXB7P09629 217 aa19.2■□□□□ 0.66
CCDC88C-202ENST00000334448 KIF16BQ96L93 1317 aa19.2■□□□□ 0.66
CCDC88C-202ENST00000334448 HEG1Q9ULI3 1381 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms