RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 URI1O94763 535 aaPredicted RBP16.2■□□□□ 0.18
CSPG4-201ENST00000308508 MCM5P33992 734 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 CHD1LQ86WJ1 897 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 PRDM2Q13029 1718 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 ANAPC15P60006 121 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 C1orf115Q9H7X2 142 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 SSR1P43307 286 aaKnown RBP16.19■□□□□ 0.18
CSPG4-201ENST00000308508 SMARCC1Q92922 1105 aaPredicted RBP16.19■□□□□ 0.18
CSPG4-201ENST00000308508 DYNC1I1O14576 645 aa16.19■□□□□ 0.18
CSPG4-201ENST00000308508 TAOK3Q9H2K8 898 aa16.19■□□□□ 0.18
CSPG4-201ENST00000308508 AKNAQ7Z591 1439 aa16.19■□□□□ 0.18
CSPG4-201ENST00000308508 CTR9Q6PD62 1173 aa16.19■□□□□ 0.18
CSPG4-201ENST00000308508 GOPCQ9HD26 462 aa16.19■□□□□ 0.18
CSPG4-201ENST00000308508 PLEKHH1Q9ULM0 1364 aa16.19■□□□□ 0.18
CSPG4-201ENST00000308508 PAFAH1B1P43034 410 aa16.19■□□□□ 0.18
CSPG4-201ENST00000308508 NAA15Q9BXJ9 866 aaKnown RBP16.19■□□□□ 0.18
CSPG4-201ENST00000308508 CTNNA3Q9UI47 895 aa16.19■□□□□ 0.18
CSPG4-201ENST00000308508 IBSPP21815 317 aaPredicted RBP16.18■□□□□ 0.18
CSPG4-201ENST00000308508 FKBP15Q5T1M5 1219 aa16.18■□□□□ 0.18
CSPG4-201ENST00000308508 PPP4R3BQ5MIZ7 849 aa16.18■□□□□ 0.18
CSPG4-201ENST00000308508 ANKRD18BA2A2Z9 1011 aa16.18■□□□□ 0.18
CSPG4-201ENST00000308508 GTF2F1P35269 517 aaKnown RBP eCLIP16.18■□□□□ 0.18
CSPG4-201ENST00000308508 TWISTNBQ3B726 338 aaPredicted RBP16.18■□□□□ 0.18
CSPG4-201ENST00000308508 TCP11L2Q8N4U5 519 aa16.18■□□□□ 0.18
CSPG4-201ENST00000308508 GSTTP1A0A1W2PQM5 241 aa16.18■□□□□ 0.18
CSPG4-201ENST00000308508 TOP1P11387 765 aaKnown RBP16.18■□□□□ 0.18
CSPG4-201ENST00000308508 CLIP2Q9UDT6 1046 aa16.18■□□□□ 0.18
CSPG4-201ENST00000308508 TNNT1P13805 278 aa16.18■□□□□ 0.18
CSPG4-201ENST00000308508 BCCIPQ9P287 314 aaKnown RBP eCLIP16.18■□□□□ 0.18
CSPG4-201ENST00000308508 GSDMDP57764 484 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 RAI14Q9P0K7 980 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 USO1O60763 962 aaKnown RBP16.17■□□□□ 0.18
CSPG4-201ENST00000308508 CCDC178Q5BJE1 867 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 C6orf163Q5TEZ5 329 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 MNAT1P51948 309 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 NUP133Q8WUM0 1156 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 CNNM1Q9NRU3 951 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 GOLGA6L9A6NEM1 432 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 CTAGE5O15320 804 aa16.17■□□□□ 0.18
CSPG4-201ENST00000308508 JAKMIP1Q96N16 626 aaKnown RBP16.16■□□□□ 0.18
CSPG4-201ENST00000308508 CFAP57Q96MR6 1250 aa16.16■□□□□ 0.18
CSPG4-201ENST00000308508 CAMK4Q16566 473 aa16.16■□□□□ 0.18
CSPG4-201ENST00000308508 DNAAF4Q8WXU2 420 aa16.16■□□□□ 0.18
CSPG4-201ENST00000308508 CCDC97Q96F63 343 aaPredicted RBP16.16■□□□□ 0.18
CSPG4-201ENST00000308508 UBE4AQ14139 1066 aa16.16■□□□□ 0.18
CSPG4-201ENST00000308508 DNAI2Q9GZS0 605 aa16.16■□□□□ 0.18
CSPG4-201ENST00000308508 FGFR1OPO95684 399 aaKnown RBP16.16■□□□□ 0.18
CSPG4-201ENST00000308508 GTF2A1P52655 376 aaPredicted RBP16.16■□□□□ 0.18
CSPG4-201ENST00000308508 HOOK3Q86VS8 718 aa16.16■□□□□ 0.18
CSPG4-201ENST00000308508 SCAND2PQ9GZW5 306 aaPredicted RBP16.16■□□□□ 0.18
CSPG4-201ENST00000308508 SMG6Q86US8 1419 aaKnown RBP16.15■□□□□ 0.18
CSPG4-201ENST00000308508 MVPQ14764 893 aaKnown RBP16.15■□□□□ 0.18
CSPG4-201ENST00000308508 SSBP05455 408 aaKnown RBP eCLIP16.15■□□□□ 0.18
CSPG4-201ENST00000308508 BMS1Q14692 1282 aaKnown RBP16.15■□□□□ 0.18
CSPG4-201ENST00000308508 SPECC1Q5M775 1068 aa16.15■□□□□ 0.18
CSPG4-201ENST00000308508 CDCA7LQ96GN5 454 aa16.15■□□□□ 0.18
CSPG4-201ENST00000308508 MTHFSP49914 203 aa16.15■□□□□ 0.18
CSPG4-201ENST00000308508 EXOSC9Q06265 439 aaKnown RBP16.14■□□□□ 0.18
CSPG4-201ENST00000308508 PAXBP1Q9Y5B6 917 aa16.14■□□□□ 0.18
CSPG4-201ENST00000308508 ATP2B2Q01814 1243 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 CACNA2D4Q7Z3S7 1137 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 UBAC1Q9BSL1 405 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 PDS5BQ9NTI5 1447 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 IVLP07476 585 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 ALS2CR12Q96Q35 445 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 MATR3P43243 847 aaKnown RBP eCLIP16.14■□□□□ 0.17
CSPG4-201ENST00000308508 TSG101Q99816 390 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 CASTP20810 708 aaKnown RBP16.14■□□□□ 0.17
CSPG4-201ENST00000308508 C16orf45Q96MC5 204 aaPredicted RBP16.14■□□□□ 0.17
CSPG4-201ENST00000308508 LMAN1P49257 510 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 XPCQ01831 940 aaPredicted RBP16.14■□□□□ 0.17
CSPG4-201ENST00000308508 PRIMPOLQ96LW4 560 aa16.14■□□□□ 0.17
CSPG4-201ENST00000308508 ZHX1Q9UKY1 873 aaPredicted RBP16.13■□□□□ 0.17
CSPG4-201ENST00000308508 TRERF1Q96PN7 1200 aa16.13■□□□□ 0.17
CSPG4-201ENST00000308508 ATF7IPQ6VMQ6 1270 aa16.13■□□□□ 0.17
CSPG4-201ENST00000308508 UBE2Q2Q8WVN8 375 aa16.13■□□□□ 0.17
CSPG4-201ENST00000308508 MYOM3Q5VTT5 1437 aa16.12■□□□□ 0.17
CSPG4-201ENST00000308508 NUP88Q99567 741 aaPredicted RBP16.12■□□□□ 0.17
CSPG4-201ENST00000308508 HSPA4P34932 840 aa16.12■□□□□ 0.17
CSPG4-201ENST00000308508 NBPF1Q3BBV0 1214 aa16.12■□□□□ 0.17
CSPG4-201ENST00000308508 YEATS4O95619 227 aa16.11■□□□□ 0.17
CSPG4-201ENST00000308508 CWC27Q6UX04 472 aaKnown RBP16.11■□□□□ 0.17
CSPG4-201ENST00000308508 WDR63Q8IWG1 891 aa16.11■□□□□ 0.17
CSPG4-201ENST00000308508 BBXQ8WY36 941 aaPredicted RBP16.11■□□□□ 0.17
CSPG4-201ENST00000308508 MAP4K4O95819 1239 aaPredicted RBP16.11■□□□□ 0.17
CSPG4-201ENST00000308508 SLC4A2P04920 1241 aa16.11■□□□□ 0.17
CSPG4-201ENST00000308508 CEP112Q8N8E3 955 aa16.11■□□□□ 0.17
CSPG4-201ENST00000308508 HLTFQ14527 1009 aaKnown RBP eCLIP16.1■□□□□ 0.17
CSPG4-201ENST00000308508 GGNBP2Q9H3C7 697 aa16.1■□□□□ 0.17
CSPG4-201ENST00000308508 CECR2Q9BXF3 1484 aa16.1■□□□□ 0.17
CSPG4-201ENST00000308508 RBM25P49756 843 aaKnown RBP16.1■□□□□ 0.17
CSPG4-201ENST00000308508 LARP1Q6PKG0 1096 aaKnown RBP16.1■□□□□ 0.17
CSPG4-201ENST00000308508 PHAXQ9H814 394 aaKnown RBP16.1■□□□□ 0.17
CSPG4-201ENST00000308508 KRT222Q8N1A0 295 aa16.1■□□□□ 0.17
CSPG4-201ENST00000308508 PPP2R1AP30153 589 aa16.1■□□□□ 0.17
CSPG4-201ENST00000308508 DAAM2Q86T65 1068 aa16.1■□□□□ 0.17
CSPG4-201ENST00000308508 AACSQ86V21 672 aa16.1■□□□□ 0.17
CSPG4-201ENST00000308508 FSD2A1L4K1 749 aa16.09■□□□□ 0.17
CSPG4-201ENST00000308508 BCAR3O75815 825 aa16.09■□□□□ 0.17
CSPG4-201ENST00000308508 TDO2P48775 406 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms