RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 RNF187Q5TA31 235 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-201ENST00000302528 PIBF1Q8WXW3 757 aa12.14□□□□□ -0.47
CLIP1-201ENST00000302528 NUP62CLQ9H1M0 184 aa12.14□□□□□ -0.47
CLIP1-201ENST00000302528 MPHOSPH8Q99549 860 aa12.14□□□□□ -0.47
CLIP1-201ENST00000302528 NLRP6P59044 892 aa12.14□□□□□ -0.47
CLIP1-201ENST00000302528 SIL1Q9H173 461 aa12.14□□□□□ -0.47
CLIP1-201ENST00000302528 VPS36Q86VN1 386 aa12.14□□□□□ -0.47
CLIP1-201ENST00000302528 GAS2L2Q8NHY3 880 aa12.14□□□□□ -0.47
CLIP1-201ENST00000302528 FERP16591 822 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 PLEKHO1Q53GL0 409 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-201ENST00000302528 PDCL2Q8N4E4 241 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 WASF1Q92558 559 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 CFAP57Q96MR6 1250 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 GGNBP2Q9H3C7 697 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 TOP2BQ02880 1626 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 FGD6Q6ZV73 1430 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 CCDC175P0C221 793 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 CTNNA2P26232 953 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 FKBP15Q5T1M5 1219 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 MICALCLQ6ZW33 695 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 CACNA2D4Q7Z3S7 1137 aa12.13□□□□□ -0.47
CLIP1-201ENST00000302528 FKBP4Q02790 459 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLIP1-201ENST00000302528 HOMER2Q9NSB8 354 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 BLOC1S2Q6QNY1 142 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 GCC1Q96CN9 775 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 CEP131Q9UPN4 1083 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 C1orf115Q9H7X2 142 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 PODXL2Q9NZ53 605 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 MCM3P25205 808 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 TSG101Q99816 390 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 MAP4K4O95819 1239 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-201ENST00000302528 SPECC1Q5M775 1068 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 RAI14Q9P0K7 980 aa12.12□□□□□ -0.47
CLIP1-201ENST00000302528 MIA2Q96PC5 1412 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 GRPEL1Q9HAV7 217 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 CTNNA3Q9UI47 895 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 KIF5CO60282 957 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 BMS1Q14692 1282 aaKnown RBP12.11□□□□□ -0.47
CLIP1-201ENST00000302528 PDZRN3Q9UPQ7 1066 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 ZSCAN12O43309 604 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 DNA2P51530 1060 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 CCDC150Q8NCX0 1101 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 UBA5Q9GZZ9 404 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 SERPINA10Q9UK55 444 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 DDX11Q96FC9 970 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 STRN4Q9NRL3 753 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 PDRG1Q9NUG6 133 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 TMOD2Q9NZR1 351 aa12.11□□□□□ -0.47
CLIP1-201ENST00000302528 FGD5Q6ZNL6 1462 aa12.1□□□□□ -0.47
CLIP1-201ENST00000302528 C6orf163Q5TEZ5 329 aa12.1□□□□□ -0.47
CLIP1-201ENST00000302528 KIF4BQ2VIQ3 1234 aa12.1□□□□□ -0.47
CLIP1-201ENST00000302528 K7ELQ4 463 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-201ENST00000302528 KIF2AO00139 706 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-201ENST00000302528 CASQ1P31415 396 aa12.1□□□□□ -0.47
CLIP1-201ENST00000302528 PPP6R1Q9UPN7 881 aa12.1□□□□□ -0.47
CLIP1-201ENST00000302528 WDHD1O75717 1129 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-201ENST00000302528 PAFAH1B1P43034 410 aa12.1□□□□□ -0.47
CLIP1-201ENST00000302528 TSNARE1Q96NA8 513 aa12.1□□□□□ -0.47
CLIP1-201ENST00000302528 TAOK3Q9H2K8 898 aa12.1□□□□□ -0.47
CLIP1-201ENST00000302528 ZSCAN31Q96LW9 406 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-201ENST00000302528 SFPQP23246 707 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLIP1-201ENST00000302528 GIGYF2Q6Y7W6 1299 aaKnown RBP12.09□□□□□ -0.47
CLIP1-201ENST00000302528 SSX2IPQ9Y2D8 614 aa12.09□□□□□ -0.47
CLIP1-201ENST00000302528 TWISTNBQ3B726 338 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-201ENST00000302528 IPO4Q8TEX9 1081 aaKnown RBP12.09□□□□□ -0.47
CLIP1-201ENST00000302528 SEC63Q9UGP8 760 aaKnown RBP12.09□□□□□ -0.47
CLIP1-201ENST00000302528 FSD2A1L4K1 749 aa12.09□□□□□ -0.47
CLIP1-201ENST00000302528 PTPN14Q15678 1187 aa12.09□□□□□ -0.47
CLIP1-201ENST00000302528 TATP17735 454 aaPredicted RBP12.08□□□□□ -0.47
CLIP1-201ENST00000302528 FERMT2Q96AC1 680 aa12.08□□□□□ -0.47
CLIP1-201ENST00000302528 GPRASP1Q5JY77 1395 aa12.08□□□□□ -0.47
CLIP1-201ENST00000302528 TNNT1P13805 278 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 HDGFL1Q5TGJ6 251 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 ZNF428Q96B54 188 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 DRC1Q96MC2 740 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 JAKMIP1Q96N16 626 aaKnown RBP12.08□□□□□ -0.48
CLIP1-201ENST00000302528 LRP2BPQ9P2M1 347 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 URI1O94763 535 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-201ENST00000302528 CABP4P57796 275 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 FAM107BQ9H098 131 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 MAP3K11Q16584 847 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 SPECC1LQ69YQ0 1117 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 ABTB2Q8N961 1025 aa12.08□□□□□ -0.48
CLIP1-201ENST00000302528 USO1O60763 962 aaKnown RBP12.07□□□□□ -0.48
CLIP1-201ENST00000302528 MYCNP04198 464 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-201ENST00000302528 AACSQ86V21 672 aa12.07□□□□□ -0.48
CLIP1-201ENST00000302528 KLHL10Q6JEL2 608 aa12.07□□□□□ -0.48
CLIP1-201ENST00000302528 SMG6Q86US8 1419 aaKnown RBP12.07□□□□□ -0.48
CLIP1-201ENST00000302528 HLTFQ14527 1009 aaKnown RBP eCLIP12.07□□□□□ -0.48
CLIP1-201ENST00000302528 KRT32Q14532 448 aa12.07□□□□□ -0.48
CLIP1-201ENST00000302528 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.07□□□□□ -0.48
CLIP1-201ENST00000302528 ZWINTO95229 277 aa12.07□□□□□ -0.48
CLIP1-201ENST00000302528 SLC4A2P04920 1241 aa12.07□□□□□ -0.48
CLIP1-201ENST00000302528 TDRD12Q587J7 1177 aaKnown RBP12.07□□□□□ -0.48
CLIP1-201ENST00000302528 FANCD2Q9BXW9 1451 aa12.07□□□□□ -0.48
CLIP1-201ENST00000302528 TMCO5BA8MYB1 307 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 RBM25P49756 843 aaKnown RBP12.06□□□□□ -0.48
CLIP1-201ENST00000302528 CCT4P50991 539 aaKnown RBP12.06□□□□□ -0.48
CLIP1-201ENST00000302528 GPATCH11Q8N954 259 aa12.06□□□□□ -0.48
CLIP1-201ENST00000302528 PPP1R14CQ8TAE6 165 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms