RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 VPS37DQ86XT2 251 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 GBP7Q8N8V2 638 aaPredicted RBP13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 NGDNQ8NEJ9 315 aaKnown RBP13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 KIF5BP33176 963 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 ZBTB17Q13105 803 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 CEP112Q8N8E3 955 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 RAI14Q9P0K7 980 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 FGD6Q6ZV73 1430 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 GTF2E1P29083 439 aaPredicted RBP13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 SEPT10Q9P0V9 454 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 ZNF397Q8NF99 534 aaPredicted RBP13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 WHAMMQ8TF30 809 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 CWC25Q9NXE8 425 aaPredicted RBP13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 DDX19BQ9UMR2 479 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 CEP57Q86XR8 500 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 BACH2Q9BYV9 841 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 TANGO6Q9C0B7 1094 aa13.04□□□□□ -0.32
HDGFL3-201ENST00000299633 IFIT2P09913 472 aaKnown RBP13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 NSRP1Q9H0G5 558 aaKnown RBP13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 NECTIN2Q92692 538 aa13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 LNPKQ9C0E8 428 aa13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 GOLIM4O00461 696 aa13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 KIF5CO60282 957 aa13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 TAOK3Q9H2K8 898 aa13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 FIBPO43427 364 aa13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 SREK1Q8WXA9 508 aaKnown RBP13.03□□□□□ -0.32
HDGFL3-201ENST00000299633 FILIP1Q7Z7B0 1213 aa13.02□□□□□ -0.32
HDGFL3-201ENST00000299633 EVC2Q86UK5 1308 aa13.02□□□□□ -0.32
HDGFL3-201ENST00000299633 LRRC9Q6ZRR7 1453 aa13.02□□□□□ -0.32
HDGFL3-201ENST00000299633 PDE1CQ14123 709 aaPredicted RBP13.02□□□□□ -0.32
HDGFL3-201ENST00000299633 TACC1O75410 805 aa13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 TRIM21P19474 475 aaKnown RBP13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 NAA25Q14CX7 972 aa13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 DNAI2Q9GZS0 605 aa13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 CITO14578 2027 aa13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 KRT18P05783 430 aaKnown RBP13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 ZSCAN30Q86W11 494 aa13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 ERC1Q8IUD2 1116 aa13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 HOMER2Q9NSB8 354 aa13.02□□□□□ -0.33
HDGFL3-201ENST00000299633 RFC1P35251 1148 aaPredicted RBP13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 SRRTQ9BXP5 876 aaKnown RBP13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 SMARCC1Q92922 1105 aaPredicted RBP13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 MXRA7P84157 204 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 JMYQ8N9B5 988 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 VGLL3A8MV65 326 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 POTEJP0CG39 1038 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 TPD52P55327 224 aaPredicted RBP13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 A0A1B0GUA9 196 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 ZNF853P0CG23 659 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 APBB1IPQ7Z5R6 666 aaPredicted RBP13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 COG3Q96JB2 828 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 SEPT8Q92599 483 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 MYOM3Q5VTT5 1437 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 SYNJ1O43426 1573 aa13.01□□□□□ -0.33
HDGFL3-201ENST00000299633 C10orf67Q8IYJ2 551 aa13□□□□□ -0.33
HDGFL3-201ENST00000299633 RABGAP1Q9Y3P9 1069 aa13□□□□□ -0.33
HDGFL3-201ENST00000299633 RAB3IL1Q8TBN0 382 aa13□□□□□ -0.33
HDGFL3-201ENST00000299633 SART3Q15020 963 aaKnown RBP13□□□□□ -0.33
HDGFL3-201ENST00000299633 CCDC88CQ9P219 2028 aa13□□□□□ -0.33
HDGFL3-201ENST00000299633 MCM2P49736 904 aa13□□□□□ -0.33
HDGFL3-201ENST00000299633 MCM4P33991 863 aa13□□□□□ -0.33
HDGFL3-201ENST00000299633 TRHP20396 242 aaPredicted RBP12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 PSMA5P28066 241 aa12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 PRR16Q569H4 304 aa12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 CFAP58Q5T655 872 aa12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 DYNC1I1O14576 645 aa12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 CETN2P41208 172 aa12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 CEP128Q6ZU80 1094 aa12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 NAA15Q9BXJ9 866 aaKnown RBP12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 FANCD2Q9BXW9 1451 aa12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 FGD5Q6ZNL6 1462 aa12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 MKRN1Q9UHC7 482 aaKnown RBP12.99□□□□□ -0.33
HDGFL3-201ENST00000299633 C9orf78Q9NZ63 289 aaPredicted RBP12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 CCDC178Q5BJE1 867 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 KRT222Q8N1A0 295 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 MINK1Q8N4C8 1332 aaPredicted RBP12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 PPFIBP2Q8ND30 876 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 PPP1R14CQ8TAE6 165 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 ERC2O15083 957 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 RIPK4P57078 832 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 SPA17Q15506 151 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 ATP2C2O75185 946 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 PRPF31Q8WWY3 499 aaKnown RBP12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 PPFIA2O75334 1257 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 CCDC121Q6ZUS5 278 aa12.98□□□□□ -0.33
HDGFL3-201ENST00000299633 CTNNBL1Q8WYA6 563 aaPredicted RBP12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 MAP3K7CLP57077 242 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 TSPYL2Q9H2G4 693 aaPredicted RBP12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 COMMD10Q9Y6G5 202 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 IKBKGQ9Y6K9 419 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 FYCO1Q9BQS8 1478 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 A0A1W2PRG0 241 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 SYCE3A1L190 88 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 HSF2BPO75031 334 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 STMN1P16949 149 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 ZC4H2Q9NQZ6 224 aa12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 CEBPZQ03701 1054 aaKnown RBP12.97□□□□□ -0.33
HDGFL3-201ENST00000299633 HECW1Q76N89 1606 aa12.96□□□□□ -0.33
HDGFL3-201ENST00000299633 EIF2S2P20042 333 aaKnown RBP12.96□□□□□ -0.33
HDGFL3-201ENST00000299633 ME1P48163 572 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms