RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 UTP14CQ5TAP6 766 aaKnown RBP7.66□□□□□ -1.18
VPS35-201ENST00000299138 AXDND1Q5T1B0 1012 aaPredicted RBP7.66□□□□□ -1.18
VPS35-201ENST00000299138 PAXIP1Q6ZW49 1069 aaPredicted RBP7.66□□□□□ -1.18
VPS35-201ENST00000299138 BBXQ8WY36 941 aaPredicted RBP7.66□□□□□ -1.18
VPS35-201ENST00000299138 SHROOM2Q13796 1616 aa7.66□□□□□ -1.18
VPS35-201ENST00000299138 USP25Q9UHP3 1055 aa7.66□□□□□ -1.18
VPS35-201ENST00000299138 NF2P35240 595 aa7.66□□□□□ -1.18
VPS35-201ENST00000299138 TNPO1Q92973 898 aaKnown RBP7.66□□□□□ -1.18
VPS35-201ENST00000299138 SF3A1Q15459 793 aaKnown RBP7.66□□□□□ -1.18
VPS35-201ENST00000299138 TET3O43151 1660 aa7.66□□□□□ -1.18
VPS35-201ENST00000299138 AOX1Q06278 1338 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 SYCP1Q15431 976 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 KRI1Q8N9T8 703 aaKnown RBP7.65□□□□□ -1.18
VPS35-201ENST00000299138 ERVK-7P63135 1459 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 ZNF518AQ6AHZ1 1483 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 NAP1L1P55209 391 aaKnown RBP7.65□□□□□ -1.18
VPS35-201ENST00000299138 TRERF1Q96PN7 1200 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 MADDQ8WXG6 1647 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 NRXN1Q9ULB1 1477 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 PDCP20941 246 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 ZBTB40Q9NUA8 1239 aa7.65□□□□□ -1.18
VPS35-201ENST00000299138 IGHDP01880 384 aa7.65□□□□□ -1.19
VPS35-201ENST00000299138 FAM69CQ0P6D2 419 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 FBXW7Q969H0 707 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 FEZ1Q99689 392 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS35-201ENST00000299138 USP8P40818 1118 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 PLCD3Q8N3E9 789 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 PDLIM2Q96JY6 352 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 ZSCAN31Q96LW9 406 aaPredicted RBP7.64□□□□□ -1.19
VPS35-201ENST00000299138 GNAI3P08754 354 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 CCDC146Q8IYE0 955 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 PTPRCP08575 1304 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 CDC42BPAQ5VT25 1732 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 MLECQ14165 292 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 ABCC1P33527 1531 aa7.64□□□□□ -1.19
VPS35-201ENST00000299138 MTHFSP49914 203 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 RUFY2Q8WXA3 655 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 TSPY26PQ9H489 355 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 CHMP3Q9Y3E7 222 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 TTLL5Q6EMB2 1281 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 TMPOP42166 694 aaKnown RBP7.63□□□□□ -1.19
VPS35-201ENST00000299138 LRSAM1Q6UWE0 723 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 ANKRD62A6NC57 917 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 ERC2O15083 957 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 CCP110O43303 1012 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 BAG4O95429 457 aaKnown RBP7.63□□□□□ -1.19
VPS35-201ENST00000299138 BABAM1Q9NWV8 329 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 IPO7O95373 1038 aaKnown RBP7.63□□□□□ -1.19
VPS35-201ENST00000299138 VPS53Q5VIR6 699 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 IQGAP1P46940 1657 aa7.63□□□□□ -1.19
VPS35-201ENST00000299138 CCT4P50991 539 aaKnown RBP7.63□□□□□ -1.19
VPS35-201ENST00000299138 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.63□□□□□ -1.19
VPS35-201ENST00000299138 PCDHB15Q9Y5E8 787 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 GOLGA6L7A0A1B0GV03 622 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 DDIT3P35638 169 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 CAGE1Q8TC20 777 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 RRAGDQ9NQL2 400 aaPredicted RBP7.62□□□□□ -1.19
VPS35-201ENST00000299138 IQSEC2Q5JU85 1478 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 CD109Q6YHK3 1445 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 IRX3P78415 501 aaPredicted RBP7.62□□□□□ -1.19
VPS35-201ENST00000299138 NFE2L2Q16236 605 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 TRIM27P14373 513 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 EXOSC9Q06265 439 aaKnown RBP7.62□□□□□ -1.19
VPS35-201ENST00000299138 KIAA0232Q92628 1395 aa7.62□□□□□ -1.19
VPS35-201ENST00000299138 HIP1O00291 1037 aa7.61□□□□□ -1.19
VPS35-201ENST00000299138 RIPK4P57078 832 aa7.61□□□□□ -1.19
VPS35-201ENST00000299138 VWDEQ8N2E2 1590 aa7.61□□□□□ -1.19
VPS35-201ENST00000299138 CPSF1Q10570 1443 aaKnown RBP7.61□□□□□ -1.19
VPS35-201ENST00000299138 SIRT1Q96EB6 747 aa7.61□□□□□ -1.19
VPS35-201ENST00000299138 CGNQ9P2M7 1197 aaKnown RBP7.61□□□□□ -1.19
VPS35-201ENST00000299138 PTCH1Q13635 1447 aa7.61□□□□□ -1.19
VPS35-201ENST00000299138 ANKRD45Q5TZF3 282 aa7.61□□□□□ -1.19
VPS35-201ENST00000299138 ERCC4Q92889 916 aaPredicted RBP7.61□□□□□ -1.19
VPS35-201ENST00000299138 ZHX1Q9UKY1 873 aaPredicted RBP7.61□□□□□ -1.19
VPS35-201ENST00000299138 MARCH6O60337 910 aa7.61□□□□□ -1.19
VPS35-201ENST00000299138 TRHP20396 242 aaPredicted RBP7.6□□□□□ -1.19
VPS35-201ENST00000299138 ENOX2Q16206 610 aaKnown RBP7.6□□□□□ -1.19
VPS35-201ENST00000299138 DCTPP1Q9H773 170 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 ZNF692Q9BU19 519 aaPredicted RBP7.6□□□□□ -1.19
VPS35-201ENST00000299138 HSP90AB2PQ58FF8 381 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 CFAP70Q5T0N1 1121 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 SSH1Q8WYL5 1049 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 CCDC94Q9BW85 323 aaPredicted RBP7.6□□□□□ -1.19
VPS35-201ENST00000299138 SH2B1Q9NRF2 756 aaPredicted RBP7.6□□□□□ -1.19
VPS35-201ENST00000299138 STK31Q9BXU1 1019 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 NLRP1Q9C000 1473 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 TRIM6-TRIM34B2RNG4 842 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 GPATCH3Q96I76 525 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 AATKQ6ZMQ8 1374 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 H3BQV1 296 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 GABPB1Q06547 395 aaPredicted RBP7.6□□□□□ -1.19
VPS35-201ENST00000299138 IFFO2Q5TF58 517 aa7.6□□□□□ -1.19
VPS35-201ENST00000299138 ATP7AQ04656 1500 aa7.59□□□□□ -1.19
VPS35-201ENST00000299138 TUBB4BP68371 445 aa7.59□□□□□ -1.19
VPS35-201ENST00000299138 ZMYND15Q9H091 742 aa7.59□□□□□ -1.19
VPS35-201ENST00000299138 MYO3AQ8NEV4 1616 aa7.59□□□□□ -1.19
VPS35-201ENST00000299138 OSBPL3Q9H4L5 887 aa7.59□□□□□ -1.19
VPS35-201ENST00000299138 NOS1P29475 1434 aa7.59□□□□□ -1.19
VPS35-201ENST00000299138 FAM135BQ49AJ0 1406 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms