RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 VPS72Q15906 364 aa16.46■□□□□ 0.22
C9orf3-201ENST00000277198 TERF2IPQ9NYB0 399 aa16.46■□□□□ 0.22
C9orf3-201ENST00000277198 NME9Q86XW9 330 aa16.45■□□□□ 0.22
C9orf3-201ENST00000277198 PNNQ9H307 717 aaKnown RBP16.45■□□□□ 0.22
C9orf3-201ENST00000277198 MON2Q7Z3U7 1717 aa16.45■□□□□ 0.22
C9orf3-201ENST00000277198 ZBTB7CA1YPR0 619 aa16.44■□□□□ 0.22
C9orf3-201ENST00000277198 ZNF692Q9BU19 519 aaPredicted RBP16.44■□□□□ 0.22
C9orf3-201ENST00000277198 PLEKHF1Q96S99 279 aa16.44■□□□□ 0.22
C9orf3-201ENST00000277198 STRN4Q9NRL3 753 aa16.44■□□□□ 0.22
C9orf3-201ENST00000277198 VIRMAQ69YN4 1812 aaKnown RBP16.44■□□□□ 0.22
C9orf3-201ENST00000277198 ZKSCAN2Q63HK3 967 aa16.43■□□□□ 0.22
C9orf3-201ENST00000277198 SLIT3O75094 1523 aa16.43■□□□□ 0.22
C9orf3-201ENST00000277198 MVPQ14764 893 aaKnown RBP16.42■□□□□ 0.22
C9orf3-201ENST00000277198 CAMTA1Q9Y6Y1 1673 aa16.42■□□□□ 0.22
C9orf3-201ENST00000277198 COL3A1P02461 1466 aaPredicted RBP16.42■□□□□ 0.22
C9orf3-201ENST00000277198 RLBP1P12271 317 aa16.42■□□□□ 0.22
C9orf3-201ENST00000277198 BECN1Q14457 450 aa16.42■□□□□ 0.22
C9orf3-201ENST00000277198 UPF1Q92900 1129 aaKnown RBP eCLIP16.42■□□□□ 0.22
C9orf3-201ENST00000277198 PCDHB15Q9Y5E8 787 aa16.42■□□□□ 0.22
C9orf3-201ENST00000277198 CPDO75976 1380 aa16.41■□□□□ 0.22
C9orf3-201ENST00000277198 GSE1Q14687 1217 aa16.41■□□□□ 0.22
C9orf3-201ENST00000277198 TTC21AQ8NDW8 1320 aa16.41■□□□□ 0.22
C9orf3-201ENST00000277198 TMPOP42166 694 aaKnown RBP16.4■□□□□ 0.22
C9orf3-201ENST00000277198 FAM98CQ17RN3 349 aaKnown RBP16.4■□□□□ 0.22
C9orf3-201ENST00000277198 HDGFL2Q7Z4V5 671 aaPredicted RBP16.4■□□□□ 0.22
C9orf3-201ENST00000277198 UPF2Q9HAU5 1272 aaKnown RBP16.4■□□□□ 0.22
C9orf3-201ENST00000277198 LMO7Q8WWI1 1683 aa16.4■□□□□ 0.22
C9orf3-201ENST00000277198 SLC4A3P48751 1232 aa16.4■□□□□ 0.22
C9orf3-201ENST00000277198 SEPT12Q8IYM1 358 aa16.4■□□□□ 0.22
C9orf3-201ENST00000277198 DZIP1LQ8IYY4 767 aaKnown RBP16.4■□□□□ 0.22
C9orf3-201ENST00000277198 FYB1O15117 783 aa16.39■□□□□ 0.21
C9orf3-201ENST00000277198 SPATA31A5Q5VU36 1347 aa16.39■□□□□ 0.21
C9orf3-201ENST00000277198 SPATA31A7Q8IWB4 1347 aa16.39■□□□□ 0.21
C9orf3-201ENST00000277198 EDC4Q6P2E9 1401 aaKnown RBP16.39■□□□□ 0.21
C9orf3-201ENST00000277198 LARP1Q6PKG0 1096 aaKnown RBP16.38■□□□□ 0.21
C9orf3-201ENST00000277198 FTSJ3Q8IY81 847 aaKnown RBP16.38■□□□□ 0.21
C9orf3-201ENST00000277198 AXIN2Q9Y2T1 843 aa16.38■□□□□ 0.21
C9orf3-201ENST00000277198 ANKRD26Q9UPS8 1709 aa16.38■□□□□ 0.21
C9orf3-201ENST00000277198 NFAT5O94916 1531 aa16.38■□□□□ 0.21
C9orf3-201ENST00000277198 HDAC1Q13547 482 aaPredicted RBP16.37■□□□□ 0.21
C9orf3-201ENST00000277198 DDX19BQ9UMR2 479 aa16.37■□□□□ 0.21
C9orf3-201ENST00000277198 TRIM35Q9UPQ4 493 aa16.37■□□□□ 0.21
C9orf3-201ENST00000277198 PDZRN3Q9UPQ7 1066 aa16.37■□□□□ 0.21
C9orf3-201ENST00000277198 A0A0G2JS52 829 aa16.37■□□□□ 0.21
C9orf3-201ENST00000277198 ZNF428Q96B54 188 aa16.37■□□□□ 0.21
C9orf3-201ENST00000277198 BRWD3Q6RI45 1802 aa16.36■□□□□ 0.21
C9orf3-201ENST00000277198 COL5A2P05997 1499 aaPredicted RBP16.36■□□□□ 0.21
C9orf3-201ENST00000277198 ARHGEF25Q86VW2 580 aa16.36■□□□□ 0.21
C9orf3-201ENST00000277198 GGNBP2Q9H3C7 697 aa16.36■□□□□ 0.21
C9orf3-201ENST00000277198 SPATA31A1Q5TZJ5 1347 aa16.36■□□□□ 0.21
C9orf3-201ENST00000277198 USP31Q70CQ4 1352 aa16.35■□□□□ 0.21
C9orf3-201ENST00000277198 U2SURPO15042 1029 aaKnown RBP16.35■□□□□ 0.21
C9orf3-201ENST00000277198 ONECUT3O60422 494 aaPredicted RBP16.35■□□□□ 0.21
C9orf3-201ENST00000277198 DIAPH1O60610 1272 aaKnown RBP16.35■□□□□ 0.21
C9orf3-201ENST00000277198 FBLN1P23142 703 aa16.35■□□□□ 0.21
C9orf3-201ENST00000277198 BCL2L13Q9BXK5 485 aa16.35■□□□□ 0.21
C9orf3-201ENST00000277198 FCHSD2O94868 740 aa16.35■□□□□ 0.21
C9orf3-201ENST00000277198 EVA1CP58658 441 aa16.35■□□□□ 0.21
C9orf3-201ENST00000277198 FAM182BQ5T319 152 aa16.35■□□□□ 0.21
C9orf3-201ENST00000277198 SMC4Q9NTJ3 1288 aa16.35■□□□□ 0.21
C9orf3-201ENST00000277198 AATKQ6ZMQ8 1374 aa16.34■□□□□ 0.21
C9orf3-201ENST00000277198 COL18A1P39060 1754 aa16.34■□□□□ 0.21
C9orf3-201ENST00000277198 OVOS2A0A0J9YW53 1432 aa16.34■□□□□ 0.21
C9orf3-201ENST00000277198 OVOS2Q6IE36 1432 aa16.34■□□□□ 0.21
C9orf3-201ENST00000277198 IPO8O15397 1037 aaKnown RBP16.34■□□□□ 0.21
C9orf3-201ENST00000277198 EXOSC9Q06265 439 aaKnown RBP16.34■□□□□ 0.21
C9orf3-201ENST00000277198 ATF7IPQ6VMQ6 1270 aa16.34■□□□□ 0.21
C9orf3-201ENST00000277198 TBC1D32Q96NH3 1257 aa16.34■□□□□ 0.21
C9orf3-201ENST00000277198 KIF16BQ96L93 1317 aa16.34■□□□□ 0.21
C9orf3-201ENST00000277198 SEC24BO95487 1268 aa16.33■□□□□ 0.21
C9orf3-201ENST00000277198 BRPF1P55201 1214 aaPredicted RBP16.33■□□□□ 0.21
C9orf3-201ENST00000277198 ALDH1L2Q3SY69 923 aa16.33■□□□□ 0.21
C9orf3-201ENST00000277198 TNNQ9UQP3 1299 aa16.33■□□□□ 0.21
C9orf3-201ENST00000277198 TRIM27P14373 513 aa16.32■□□□□ 0.2
C9orf3-201ENST00000277198 KCNH5Q8NCM2 988 aa16.32■□□□□ 0.2
C9orf3-201ENST00000277198 USP54Q70EL1 1684 aa16.31■□□□□ 0.2
C9orf3-201ENST00000277198 RIPK4P57078 832 aa16.31■□□□□ 0.2
C9orf3-201ENST00000277198 SSH1Q8WYL5 1049 aa16.31■□□□□ 0.2
C9orf3-201ENST00000277198 TSR2Q969E8 191 aaKnown RBP16.31■□□□□ 0.2
C9orf3-201ENST00000277198 THSD7AQ9UPZ6 1657 aa16.31■□□□□ 0.2
C9orf3-201ENST00000277198 KRT27Q7Z3Y8 459 aa16.3■□□□□ 0.2
C9orf3-201ENST00000277198 RGPD5Q99666 1765 aa16.3■□□□□ 0.2
C9orf3-201ENST00000277198 CALD1Q05682 793 aaKnown RBP16.29■□□□□ 0.2
C9orf3-201ENST00000277198 SMC5Q8IY18 1101 aa16.29■□□□□ 0.2
C9orf3-201ENST00000277198 CHMP4BQ9H444 224 aaKnown RBP16.29■□□□□ 0.2
C9orf3-201ENST00000277198 FRAT2O75474 233 aaPredicted RBP16.28■□□□□ 0.2
C9orf3-201ENST00000277198 ZBTB40Q9NUA8 1239 aa16.27■□□□□ 0.2
C9orf3-201ENST00000277198 NOB1Q9ULX3 412 aaKnown RBP16.27■□□□□ 0.2
C9orf3-201ENST00000277198 CRB1P82279 1406 aa16.27■□□□□ 0.2
C9orf3-201ENST00000277198 TOM1L2Q6ZVM7 507 aa16.27■□□□□ 0.19
C9orf3-201ENST00000277198 WDR17Q8IZU2 1322 aa16.26■□□□□ 0.19
C9orf3-201ENST00000277198 ITPRIPQ8IWB1 547 aa16.26■□□□□ 0.19
C9orf3-201ENST00000277198 COG3Q96JB2 828 aa16.26■□□□□ 0.19
C9orf3-201ENST00000277198 LTN1O94822 1766 aa16.26■□□□□ 0.19
C9orf3-201ENST00000277198 BARGINQ6ZT62 677 aa16.26■□□□□ 0.19
C9orf3-201ENST00000277198 ARHGAP45Q92619 1136 aa16.26■□□□□ 0.19
C9orf3-201ENST00000277198 RSPH6AQ9H0K4 717 aa16.26■□□□□ 0.19
C9orf3-201ENST00000277198 ANTXR1Q9H6X2 564 aa16.26■□□□□ 0.19
C9orf3-201ENST00000277198 CSB-PGBD3P0DP91 1061 aa16.25■□□□□ 0.19
C9orf3-201ENST00000277198 RRS1Q15050 365 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms