RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 ANKIB1Q9P2G1 1089 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 PDE6BP35913 854 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 RUNDC1Q96C34 613 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 BRMS1Q9HCU9 246 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 MAST1Q9Y2H9 1570 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 SKOR2Q2VWA4 1001 aaPredicted RBP9.41□□□□□ -0.9
USP3-201ENST00000268049 SULT6B1Q6IMI4 303 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 APAF1O14727 1248 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 DDX46Q7L014 1031 aaKnown RBP9.41□□□□□ -0.9
USP3-201ENST00000268049 CRACR2BQ8N4Y2 399 aaPredicted RBP9.41□□□□□ -0.9
USP3-201ENST00000268049 ARAP3Q8WWN8 1544 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 LTKP29376 864 aa9.41□□□□□ -0.9
USP3-201ENST00000268049 SHROOM2Q13796 1616 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 B4DLN1 442 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 MRPL12P52815 198 aaKnown RBP9.4□□□□□ -0.9
USP3-201ENST00000268049 NME9Q86XW9 330 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.4□□□□□ -0.91e-6■■■□□ 15.4
USP3-201ENST00000268049 BRPF3Q9ULD4 1205 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 VTI1AQ96AJ9 217 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 EYA3Q99504 573 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 NPATQ14207 1427 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 ATP2B2Q01814 1243 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 CCDC158Q5M9N0 1113 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 PPP1R42Q7Z4L9 355 aa9.4□□□□□ -0.9
USP3-201ENST00000268049 KDM5DQ9BY66 1539 aa9.4□□□□□ -0.91
USP3-201ENST00000268049 XBP1P17861 261 aa9.4□□□□□ -0.91
USP3-201ENST00000268049 NFXL1Q6ZNB6 911 aa9.4□□□□□ -0.91
USP3-201ENST00000268049 NEUROD6Q96NK8 337 aa9.4□□□□□ -0.91
USP3-201ENST00000268049 NSD3Q9BZ95 1437 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 C6orf229H3BNL8 230 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 CAVIN4Q5BKX8 364 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 RTCBQ9Y3I0 505 aaKnown RBP9.39□□□□□ -0.91
USP3-201ENST00000268049 OTUD7BQ6GQQ9 843 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 ZSCAN25Q6NSZ9 544 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 MPRIPQ6WCQ1 1025 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 SLAIN2Q9P270 581 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 PRKAR2BP31323 418 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 SUPT20HQ8NEM7 779 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 CERKQ8TCT0 537 aa9.39□□□□□ -0.91
USP3-201ENST00000268049 PPP2R1AP30153 589 aa9.38□□□□□ -0.91
USP3-201ENST00000268049 CCDC57Q2TAC2 916 aa9.38□□□□□ -0.91
USP3-201ENST00000268049 NYXQ9GZU5 481 aa9.38□□□□□ -0.91
USP3-201ENST00000268049 QTRT2Q9H974 415 aaKnown RBP9.38□□□□□ -0.91
USP3-201ENST00000268049 ERC2O15083 957 aa9.38□□□□□ -0.91
USP3-201ENST00000268049 NACAP1Q9BZK3 213 aa9.38□□□□□ -0.91
USP3-201ENST00000268049 DIAPH3Q9NSV4 1193 aa9.38□□□□□ -0.91
USP3-201ENST00000268049 TNIP1Q15025 636 aa9.38□□□□□ -0.91
USP3-201ENST00000268049 CWC15Q9P013 229 aaKnown RBP9.38□□□□□ -0.91
USP3-201ENST00000268049 TNNI2P48788 182 aa9.38□□□□□ -0.91
USP3-201ENST00000268049 NOL8Q76FK4 1167 aaKnown RBP9.38□□□□□ -0.91
USP3-201ENST00000268049 NPHP4O75161 1426 aaPredicted RBP9.37□□□□□ -0.91
USP3-201ENST00000268049 SSFA2P28290 1259 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 NINLQ9Y2I6 1382 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 TTC39AQ5SRH9 613 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 SOGA3Q5TF21 947 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 PDE4AP27815 886 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 CHRNA2Q15822 529 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 PPP4R3AQ6IN85 833 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 NECTIN2Q92692 538 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 ABCA9Q8IUA7 1624 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 DDX49Q9Y6V7 483 aaKnown RBP9.37□□□□□ -0.91
USP3-201ENST00000268049 CFAP65Q6ZU64 1925 aaKnown RBP9.37□□□□□ -0.91
USP3-201ENST00000268049 UGGT1Q9NYU2 1555 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 NLRP1Q9C000 1473 aa9.37□□□□□ -0.91
USP3-201ENST00000268049 RALYLQ86SE5 291 aaKnown RBP9.36□□□□□ -0.91
USP3-201ENST00000268049 EHMT1Q9H9B1 1298 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 TTC21AQ8NDW8 1320 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 SCLT1Q96NL6 688 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 YTHDC2Q9H6S0 1430 aaKnown RBP9.36□□□□□ -0.91
USP3-201ENST00000268049 RCAN3Q9UKA8 241 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 ARHGEF12Q9NZN5 1544 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 E9PSI1 815 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 NBPF6Q5VWK0 638 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 NBPF5PQ86XG9 351 aaPredicted RBP9.36□□□□□ -0.91
USP3-201ENST00000268049 NBPF4Q96M43 638 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 LPXNO60711 386 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 RNF20Q5VTR2 975 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 TAF3Q5VWG9 929 aa9.36□□□□□ -0.91
USP3-201ENST00000268049 SETDB2Q96T68 719 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 CDC5LQ99459 802 aaKnown RBP9.35□□□□□ -0.91
USP3-201ENST00000268049 PATL2C9JE40 543 aaKnown RBP9.35□□□□□ -0.91
USP3-201ENST00000268049 CPLX1O14810 134 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 CABP5Q9NP86 173 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.35□□□□□ -0.912e-22■■■■■ 279.5
USP3-201ENST00000268049 KIF16BQ96L93 1317 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 LDHCP07864 332 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 SAFBQ15424 915 aaKnown RBP eCLIP9.35□□□□□ -0.91
USP3-201ENST00000268049 ERC1Q8IUD2 1116 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 IFNL2Q8IZJ0 200 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 PPM1FP49593 454 aaPredicted RBP9.35□□□□□ -0.91
USP3-201ENST00000268049 DNAJC2Q99543 621 aaKnown RBP9.35□□□□□ -0.91
USP3-201ENST00000268049 FEZ1Q99689 392 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 PZPP20742 1482 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 PPP4R3BQ5MIZ7 849 aa9.35□□□□□ -0.91
USP3-201ENST00000268049 PPIP5K1Q6PFW1 1433 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 EFCAB6Q5THR3 1501 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 DRC1Q96MC2 740 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 ZMYND15Q9H091 742 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 TTC21BQ7Z4L5 1316 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 RBM10P98175 930 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms