RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 PLCB2Q00722 1185 aa8.76□□□□□ -1.01
CSDE1-201ENST00000261443 ADGRF5Q8IZF2 1346 aa8.76□□□□□ -1.01
CSDE1-201ENST00000261443 BRD1O95696 1058 aa8.76□□□□□ -1.01
CSDE1-201ENST00000261443 FOXD4L6Q3SYB3 417 aaPredicted RBP8.76□□□□□ -1.01
CSDE1-201ENST00000261443 FOXD4L3Q6VB84 417 aaPredicted RBP8.76□□□□□ -1.01
CSDE1-201ENST00000261443 PLEKHF1Q96S99 279 aa8.76□□□□□ -1.01
CSDE1-201ENST00000261443 CTIFO43310 598 aaKnown RBP8.75□□□□□ -1.01
CSDE1-201ENST00000261443 GADD45BO75293 160 aaPredicted RBP8.75□□□□□ -1.01
CSDE1-201ENST00000261443 REC8O95072 547 aa8.75□□□□□ -1.01
CSDE1-201ENST00000261443 GABPB1Q06547 395 aaPredicted RBP8.75□□□□□ -1.01
CSDE1-201ENST00000261443 KIAA1524Q8TCG1 905 aa8.75□□□□□ -1.01
CSDE1-201ENST00000261443 TMX3Q96JJ7 454 aa8.75□□□□□ -1.01
CSDE1-201ENST00000261443 GDPD2Q9HCC8 539 aa8.75□□□□□ -1.01
CSDE1-201ENST00000261443 HCLS1P14317 486 aaPredicted RBP8.75□□□□□ -1.01
CSDE1-201ENST00000261443 NEK4P51957 841 aa8.75□□□□□ -1.01
CSDE1-201ENST00000261443 C16orf71Q8IYS4 520 aaPredicted RBP8.75□□□□□ -1.01
CSDE1-201ENST00000261443 ANKRD36BQ8N2N9 1353 aa8.74□□□□□ -1.01
CSDE1-201ENST00000261443 KDM4AO75164 1064 aa8.74□□□□□ -1.01
CSDE1-201ENST00000261443 HECW2Q9P2P5 1572 aa8.74□□□□□ -1.01
CSDE1-201ENST00000261443 PIK3C2BO00750 1634 aa8.74□□□□□ -1.01
CSDE1-201ENST00000261443 SDSP20132 328 aa8.74□□□□□ -1.01
CSDE1-201ENST00000261443 USP48Q86UV5 1035 aa8.74□□□□□ -1.01
CSDE1-201ENST00000261443 PYCARDQ9ULZ3 195 aa8.74□□□□□ -1.01
CSDE1-201ENST00000261443 SBNO2Q9Y2G9 1366 aa8.74□□□□□ -1.01
CSDE1-201ENST00000261443 NPATQ14207 1427 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 KCNJ4P48050 445 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 CCDC183Q5T5S1 534 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 CFAP65Q6ZU64 1925 aaKnown RBP8.73□□□□□ -1.01
CSDE1-201ENST00000261443 TPM3P06753 285 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 BRPF1P55201 1214 aaPredicted RBP8.73□□□□□ -1.01
CSDE1-201ENST00000261443 TPRNQ4KMQ1 711 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 ZNF428Q96B54 188 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 CCDC66A2RUB6 948 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 SMARCA5O60264 1052 aaPredicted RBP8.73□□□□□ -1.01
CSDE1-201ENST00000261443 MCM2P49736 904 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 IRX5P78411 483 aaPredicted RBP8.73□□□□□ -1.01
CSDE1-201ENST00000261443 NCBP1Q09161 790 aaKnown RBP8.73□□□□□ -1.01
CSDE1-201ENST00000261443 ARHGAP45Q92619 1136 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 CTNNA3Q9UI47 895 aa8.73□□□□□ -1.01
CSDE1-201ENST00000261443 ERC2O15083 957 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 SLFN14P0C7P3 912 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 PLCD3Q8N3E9 789 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 KCNF1Q9H3M0 494 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 SETBP1Q9Y6X0 1596 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 GOLGA6L6A8MZA4 724 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 NOL8Q76FK4 1167 aaKnown RBP8.72□□□□□ -1.01
CSDE1-201ENST00000261443 MRPL50Q8N5N7 158 aaKnown RBP8.72□□□□□ -1.01
CSDE1-201ENST00000261443 SPC24Q8NBT2 197 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 DCTPP1Q9H773 170 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 TRAK1Q9UPV9 953 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 POGZQ7Z3K3 1410 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 QRICH2Q9H0J4 1663 aa8.72□□□□□ -1.01
CSDE1-201ENST00000261443 KIF3BO15066 747 aa8.71□□□□□ -1.01
CSDE1-201ENST00000261443 MX1P20591 662 aa8.71□□□□□ -1.01
CSDE1-201ENST00000261443 OTUD7AQ8TE49 926 aaPredicted RBP8.71□□□□□ -1.01
CSDE1-201ENST00000261443 USP32Q8NFA0 1604 aa8.71□□□□□ -1.01
CSDE1-201ENST00000261443 PIK3R4Q99570 1358 aa8.71□□□□□ -1.02
CSDE1-201ENST00000261443 CUL4AQ13619 759 aa8.71□□□□□ -1.02
CSDE1-201ENST00000261443 DDX41Q9UJV9 622 aaKnown RBP8.71□□□□□ -1.02
CSDE1-201ENST00000261443 ABCC3O15438 1527 aa8.71□□□□□ -1.02
CSDE1-201ENST00000261443 APBB1O00213 710 aa8.71□□□□□ -1.02
CSDE1-201ENST00000261443 SYCP1Q15431 976 aa8.71□□□□□ -1.02
CSDE1-201ENST00000261443 INTS4Q96HW7 963 aaKnown RBP8.71□□□□□ -1.02
CSDE1-201ENST00000261443 PTCH1Q13635 1447 aa8.71□□□□□ -1.02
CSDE1-201ENST00000261443 ABCC4O15439 1325 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 CAMSAP1Q5T5Y3 1602 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 TCHHQ07283 1943 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 NSD2O96028 1365 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 VAMP4O75379 141 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 WDR33Q9C0J8 1336 aaKnown RBP8.7□□□□□ -1.02
CSDE1-201ENST00000261443 RICTORQ6R327 1708 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 ARHGEF28Q8N1W1 1705 aaKnown RBP8.7□□□□□ -1.02
CSDE1-201ENST00000261443 ELL2O00472 640 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-201ENST00000261443 TERF2Q15554 542 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 TIGD1Q96MW7 591 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 MORC2Q9Y6X9 1032 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-201ENST00000261443 MYO5BQ9ULV0 1848 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 MLH3Q9UHC1 1453 aa8.7□□□□□ -1.02
CSDE1-201ENST00000261443 ATAD2Q6PL18 1390 aa8.69□□□□□ -1.02
CSDE1-201ENST00000261443 SMTNL1A8MU46 457 aa8.69□□□□□ -1.02
CSDE1-201ENST00000261443 AP5Z1O43299 807 aa8.69□□□□□ -1.02
CSDE1-201ENST00000261443 MAPK8IP2Q13387 824 aaPredicted RBP8.69□□□□□ -1.02
CSDE1-201ENST00000261443 DNAJC2Q99543 621 aaKnown RBP8.69□□□□□ -1.02
CSDE1-201ENST00000261443 DIP2CQ9Y2E4 1556 aa8.69□□□□□ -1.02
CSDE1-201ENST00000261443 YEATS2Q9ULM3 1422 aa8.69□□□□□ -1.02
CSDE1-201ENST00000261443 NEXMIFQ5QGS0 1516 aa8.69□□□□□ -1.02
CSDE1-201ENST00000261443 TSPYL6Q8N831 410 aa8.69□□□□□ -1.02
CSDE1-201ENST00000261443 C16orf45Q96MC5 204 aaPredicted RBP8.69□□□□□ -1.02
CSDE1-201ENST00000261443 MCCP23508 829 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 GIMAP6Q6P9H5 292 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 KRT222Q8N1A0 295 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 KIF18AQ8NI77 898 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 API5Q9BZZ5 524 aaKnown RBP8.68□□□□□ -1.02
CSDE1-201ENST00000261443 CNPY2Q9Y2B0 182 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 PTGS1P23219 599 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 UBE2HP62256 183 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 NAA30Q147X3 362 aaPredicted RBP8.68□□□□□ -1.02
CSDE1-201ENST00000261443 TAF7LQ5H9L4 462 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 TMEM87AQ8NBN3 555 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 SRCIN1Q9C0H9 1055 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms