RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 NBPF14Q5TI25 921 aa11.38□□□□□ -0.59
VPS4B-201ENST00000238497 MON2Q7Z3U7 1717 aa11.38□□□□□ -0.59
VPS4B-201ENST00000238497 NUDCQ9Y266 331 aa11.38□□□□□ -0.59
VPS4B-201ENST00000238497 SMG6Q86US8 1419 aaKnown RBP11.37□□□□□ -0.59
VPS4B-201ENST00000238497 NBPF6Q5VWK0 638 aa11.37□□□□□ -0.59
VPS4B-201ENST00000238497 NBPF4Q96M43 638 aa11.37□□□□□ -0.59
VPS4B-201ENST00000238497 PPP4R2Q9NY27 417 aa11.37□□□□□ -0.59
VPS4B-201ENST00000238497 ADAMTS8Q9UP79 889 aa11.37□□□□□ -0.59
VPS4B-201ENST00000238497 LMO7Q8WWI1 1683 aa11.37□□□□□ -0.59
VPS4B-201ENST00000238497 RBM19Q9Y4C8 960 aaKnown RBP11.37□□□□□ -0.59
VPS4B-201ENST00000238497 TATP17735 454 aaPredicted RBP11.36□□□□□ -0.59
VPS4B-201ENST00000238497 ZCRB1Q8TBF4 217 aaKnown RBP11.36□□□□□ -0.59
VPS4B-201ENST00000238497 CAMKK2Q96RR4 588 aa11.35□□□□□ -0.59
VPS4B-201ENST00000238497 RGPD5Q99666 1765 aa11.35□□□□□ -0.59
VPS4B-201ENST00000238497 PER1O15534 1290 aaPredicted RBP11.35□□□□□ -0.59
VPS4B-201ENST00000238497 FLT4P35916 1363 aa11.35□□□□□ -0.59
VPS4B-201ENST00000238497 ERICH6Q7L0X2 663 aa11.34□□□□□ -0.59
VPS4B-201ENST00000238497 RRP7AQ9Y3A4 280 aaKnown RBP11.34□□□□□ -0.59
VPS4B-201ENST00000238497 THSD7AQ9UPZ6 1657 aa11.33□□□□□ -0.6
VPS4B-201ENST00000238497 POLKQ9UBT6 870 aa11.33□□□□□ -0.6
VPS4B-201ENST00000238497 PRIM1P49642 420 aaKnown RBP11.33□□□□□ -0.6
VPS4B-201ENST00000238497 RCAN3Q9UKA8 241 aa11.32□□□□□ -0.6
VPS4B-201ENST00000238497 COL18A1P39060 1754 aa11.32□□□□□ -0.6
VPS4B-201ENST00000238497 PPP2R1AP30153 589 aa11.32□□□□□ -0.6
VPS4B-201ENST00000238497 NPM2Q86SE8 214 aaKnown RBP11.32□□□□□ -0.6
VPS4B-201ENST00000238497 LTN1O94822 1766 aa11.31□□□□□ -0.6
VPS4B-201ENST00000238497 KCNQ4P56696 695 aa11.31□□□□□ -0.6
VPS4B-201ENST00000238497 TXNRD1Q16881 649 aa11.31□□□□□ -0.6
VPS4B-201ENST00000238497 EXOC6Q8TAG9 804 aa11.31□□□□□ -0.6
VPS4B-201ENST00000238497 PPP1R1BQ9UD71 204 aaPredicted RBP11.31□□□□□ -0.6
VPS4B-201ENST00000238497 INSRP06213 1382 aa11.31□□□□□ -0.6
VPS4B-201ENST00000238497 TNS2Q63HR2 1409 aa11.31□□□□□ -0.6
VPS4B-201ENST00000238497 MPRIPQ6WCQ1 1025 aa11.3□□□□□ -0.6
VPS4B-201ENST00000238497 EYA1Q99502 592 aa11.3□□□□□ -0.6
VPS4B-201ENST00000238497 RTL1A6NKG5 1358 aa11.3□□□□□ -0.6
VPS4B-201ENST00000238497 APAF1O14727 1248 aa11.3□□□□□ -0.6
VPS4B-201ENST00000238497 STK32BQ9NY57 414 aa11.3□□□□□ -0.6
VPS4B-201ENST00000238497 DISP2A7MBM2 1401 aa11.29□□□□□ -0.6
VPS4B-201ENST00000238497 MSH5O43196 834 aa11.29□□□□□ -0.6
VPS4B-201ENST00000238497 EIF4A2Q14240 407 aaKnown RBP11.29□□□□□ -0.6
VPS4B-201ENST00000238497 BCL11AQ9H165 835 aa11.29□□□□□ -0.6
VPS4B-201ENST00000238497 PLSCR1O15162 318 aa11.29□□□□□ -0.6
VPS4B-201ENST00000238497 U2SURPO15042 1029 aaKnown RBP11.28□□□□□ -0.6
VPS4B-201ENST00000238497 ANO8Q9HCE9 1232 aaPredicted RBP11.28□□□□□ -0.6
VPS4B-201ENST00000238497 ZBTB7AO95365 584 aa11.28□□□□□ -0.6
VPS4B-201ENST00000238497 SKAP1Q86WV1 359 aa11.28□□□□□ -0.6
VPS4B-201ENST00000238497 SPG7Q9UQ90 795 aa11.28□□□□□ -0.6
VPS4B-201ENST00000238497 PARD3Q8TEW0 1356 aa11.27□□□□□ -0.61
VPS4B-201ENST00000238497 CANXP27824 592 aaKnown RBP11.27□□□□□ -0.61
VPS4B-201ENST00000238497 PROM2Q8N271 834 aa11.27□□□□□ -0.61
VPS4B-201ENST00000238497 MEGF6O75095 1541 aa11.27□□□□□ -0.61
VPS4B-201ENST00000238497 MTHFSP49914 203 aa11.27□□□□□ -0.61
VPS4B-201ENST00000238497 KLHL34Q8N239 644 aa11.27□□□□□ -0.61
VPS4B-201ENST00000238497 ATF5Q9Y2D1 282 aaPredicted RBP11.27□□□□□ -0.61
VPS4B-201ENST00000238497 LRRC37A3O60309 1634 aa11.26□□□□□ -0.61
VPS4B-201ENST00000238497 RGPD1P0DJD0 1748 aa11.26□□□□□ -0.61
VPS4B-201ENST00000238497 PCDH11XQ9BZA7 1347 aa11.26□□□□□ -0.61
VPS4B-201ENST00000238497 PCDH11YQ9BZA8 1340 aa11.26□□□□□ -0.61
VPS4B-201ENST00000238497 SULT6B1Q6IMI4 303 aa11.26□□□□□ -0.61
VPS4B-201ENST00000238497 PARP4Q9UKK3 1724 aaKnown RBP11.26□□□□□ -0.61
VPS4B-201ENST00000238497 PDGFDQ9GZP0 370 aaPredicted RBP11.25□□□□□ -0.61
VPS4B-201ENST00000238497 ABCC6O95255 1503 aa11.25□□□□□ -0.61
VPS4B-201ENST00000238497 CYP27B1O15528 508 aa11.25□□□□□ -0.61
VPS4B-201ENST00000238497 HMOX1P09601 288 aa11.25□□□□□ -0.61
VPS4B-201ENST00000238497 AMER1Q5JTC6 1135 aaPredicted RBP11.25□□□□□ -0.61
VPS4B-201ENST00000238497 AEBP1Q8IUX7 1158 aa11.25□□□□□ -0.61
VPS4B-201ENST00000238497 SPON1Q9HCB6 807 aa11.25□□□□□ -0.61
VPS4B-201ENST00000238497 CCNL1Q9UK58 526 aaPredicted RBP11.25□□□□□ -0.61
VPS4B-201ENST00000238497 MYOM1P52179 1685 aa11.24□□□□□ -0.61
VPS4B-201ENST00000238497 KIF24Q5T7B8 1368 aa11.24□□□□□ -0.61
VPS4B-201ENST00000238497 FRAT1Q92837 279 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-201ENST00000238497 TFCP2L1Q9NZI6 479 aa11.24□□□□□ -0.61
VPS4B-201ENST00000238497 ZNF530Q6P9A1 599 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-201ENST00000238497 NSD2O96028 1365 aa11.24□□□□□ -0.61
VPS4B-201ENST00000238497 KIF20BQ96Q89 1820 aa11.24□□□□□ -0.61
VPS4B-201ENST00000238497 U2AF1L5P0DN76 240 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-201ENST00000238497 RRP1P56182 461 aaKnown RBP11.24□□□□□ -0.61
VPS4B-201ENST00000238497 U2AF1Q01081 240 aaKnown RBP eCLIP11.24□□□□□ -0.61
VPS4B-201ENST00000238497 SLC15A2Q16348 729 aa11.24□□□□□ -0.61
VPS4B-201ENST00000238497 BCL2L13Q9BXK5 485 aa11.23□□□□□ -0.61
VPS4B-201ENST00000238497 PLEKHO1Q53GL0 409 aaPredicted RBP11.23□□□□□ -0.61
VPS4B-201ENST00000238497 IFNL2Q8IZJ0 200 aa11.23□□□□□ -0.61
VPS4B-201ENST00000238497 TMOD3Q9NYL9 352 aa11.23□□□□□ -0.61
VPS4B-201ENST00000238497 C1orf141Q5JVX7 400 aa11.22□□□□□ -0.61
VPS4B-201ENST00000238497 LRRC4BQ9NT99 713 aa11.22□□□□□ -0.61
VPS4B-201ENST00000238497 GOLGA2Q08379 1002 aa11.22□□□□□ -0.61
VPS4B-201ENST00000238497 C20orf194Q5TEA3 1177 aa11.21□□□□□ -0.61
VPS4B-201ENST00000238497 CRBNQ96SW2 442 aa11.21□□□□□ -0.61
VPS4B-201ENST00000238497 DIAPH1O60610 1272 aaKnown RBP11.21□□□□□ -0.62
VPS4B-201ENST00000238497 RGPD2P0DJD1 1756 aa11.21□□□□□ -0.62
VPS4B-201ENST00000238497 TNS1Q9HBL0 1735 aaKnown RBP11.21□□□□□ -0.62
VPS4B-201ENST00000238497 USP54Q70EL1 1684 aa11.21□□□□□ -0.62
VPS4B-201ENST00000238497 RBM42Q9BTD8 480 aaKnown RBP11.2□□□□□ -0.62
VPS4B-201ENST00000238497 MAP2P11137 1827 aaKnown RBP11.2□□□□□ -0.62
VPS4B-201ENST00000238497 PEAK1Q9H792 1746 aa11.2□□□□□ -0.62
VPS4B-201ENST00000238497 LAS1LQ9Y4W2 734 aaKnown RBP11.2□□□□□ -0.62
VPS4B-201ENST00000238497 PHKG2P15735 406 aa11.19□□□□□ -0.62
VPS4B-201ENST00000238497 ZNF827Q17R98 1081 aa11.19□□□□□ -0.62
VPS4B-201ENST00000238497 PIGBQ92521 554 aa11.19□□□□□ -0.62
VPS4B-201ENST00000238497 CFAP53Q96M91 514 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms