RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 KIF24Q5T7B8 1368 aa15.36■□□□□ 0.05
SF3B6-201ENST00000233468 RGPD3A6NKT7 1758 aaPredicted RBP15.35■□□□□ 0.05
SF3B6-201ENST00000233468 RGPD4Q7Z3J3 1758 aa15.35■□□□□ 0.05
SF3B6-201ENST00000233468 PROM2Q8N271 834 aa15.35■□□□□ 0.05
SF3B6-201ENST00000233468 PDGFDQ9GZP0 370 aaPredicted RBP15.35■□□□□ 0.05
SF3B6-201ENST00000233468 ANO8Q9HCE9 1232 aaPredicted RBP15.35■□□□□ 0.05
SF3B6-201ENST00000233468 MAP3K19Q56UN5 1328 aa15.35■□□□□ 0.05
SF3B6-201ENST00000233468 RTL1A6NKG5 1358 aa15.35■□□□□ 0.05
SF3B6-201ENST00000233468 USP54Q70EL1 1684 aa15.34■□□□□ 0.05
SF3B6-201ENST00000233468 KAT6BQ8WYB5 2073 aa15.33■□□□□ 0.04
SF3B6-201ENST00000233468 PLSCR1O15162 318 aa15.33■□□□□ 0.04
SF3B6-201ENST00000233468 PER1O15534 1290 aaPredicted RBP15.33■□□□□ 0.04
SF3B6-201ENST00000233468 HOXC9P31274 260 aa15.33■□□□□ 0.04
SF3B6-201ENST00000233468 RRS1Q15050 365 aaKnown RBP15.33■□□□□ 0.04
SF3B6-201ENST00000233468 AMER1Q5JTC6 1135 aaPredicted RBP15.33■□□□□ 0.04
SF3B6-201ENST00000233468 CDCA7Q9BWT1 371 aaPredicted RBP15.33■□□□□ 0.04
SF3B6-201ENST00000233468 CASZ1Q86V15 1759 aa15.32■□□□□ 0.04
SF3B6-201ENST00000233468 KCNQ2O43526 872 aa15.32■□□□□ 0.04
SF3B6-201ENST00000233468 ANKRD24Q8TF21 1146 aa15.32■□□□□ 0.04
SF3B6-201ENST00000233468 CARD10Q9BWT7 1032 aa15.32■□□□□ 0.04
SF3B6-201ENST00000233468 BCL11BQ9C0K0 894 aaPredicted RBP15.32■□□□□ 0.04
SF3B6-201ENST00000233468 SPON1Q9HCB6 807 aa15.32■□□□□ 0.04
SF3B6-201ENST00000233468 ERBB3P21860 1342 aa15.32■□□□□ 0.04
SF3B6-201ENST00000233468 NPC1L1Q9UHC9 1359 aa15.32■□□□□ 0.04
SF3B6-201ENST00000233468 LTN1O94822 1766 aa15.31■□□□□ 0.04
SF3B6-201ENST00000233468 PPM1GO15355 546 aaPredicted RBP15.31■□□□□ 0.04
SF3B6-201ENST00000233468 NLRP2Q9NX02 1062 aa15.31■□□□□ 0.04
SF3B6-201ENST00000233468 FLT4P35916 1363 aa15.31■□□□□ 0.04
SF3B6-201ENST00000233468 SMG6Q86US8 1419 aaKnown RBP15.31■□□□□ 0.04
SF3B6-201ENST00000233468 TNNT2P45379 298 aaPredicted RBP15.3■□□□□ 0.04
SF3B6-201ENST00000233468 PPP1R1BQ9UD71 204 aaPredicted RBP15.3■□□□□ 0.04
SF3B6-201ENST00000233468 FBLN1P23142 703 aa15.29■□□□□ 0.04
SF3B6-201ENST00000233468 CC2D1BQ5T0F9 858 aaKnown RBP15.29■□□□□ 0.04
SF3B6-201ENST00000233468 REM2Q8IYK8 340 aaPredicted RBP15.29■□□□□ 0.04
SF3B6-201ENST00000233468 LTV1Q96GA3 475 aaPredicted RBP15.29■□□□□ 0.04
SF3B6-201ENST00000233468 INSRP06213 1382 aa15.28■□□□□ 0.04
SF3B6-201ENST00000233468 EXOC5O00471 708 aa15.28■□□□□ 0.04
SF3B6-201ENST00000233468 POLKQ9UBT6 870 aa15.28■□□□□ 0.04
SF3B6-201ENST00000233468 EMILIN1Q9Y6C2 1016 aa15.28■□□□□ 0.04
SF3B6-201ENST00000233468 BCL9O00512 1426 aa15.27■□□□□ 0.04
SF3B6-201ENST00000233468 ZBTB7AO95365 584 aa15.27■□□□□ 0.04
SF3B6-201ENST00000233468 SSUH2Q9Y2M2 353 aa15.27■□□□□ 0.04
SF3B6-201ENST00000233468 YY1P25490 414 aa15.26■□□□□ 0.03
SF3B6-201ENST00000233468 TXNRD1Q16881 649 aa15.26■□□□□ 0.03
SF3B6-201ENST00000233468 HSP90AB2PQ58FF8 381 aa15.26■□□□□ 0.03
SF3B6-201ENST00000233468 ACSBG1Q96GR2 724 aa15.26■□□□□ 0.03
SF3B6-201ENST00000233468 KIF20BQ96Q89 1820 aa15.25■□□□□ 0.03
SF3B6-201ENST00000233468 IL2RBP14784 551 aa15.24■□□□□ 0.03
SF3B6-201ENST00000233468 DDX10Q13206 875 aaKnown RBP15.24■□□□□ 0.03
SF3B6-201ENST00000233468 NHSQ6T4R5 1651 aa15.24■□□□□ 0.03
SF3B6-201ENST00000233468 TNS2Q63HR2 1409 aa15.24■□□□□ 0.03
SF3B6-201ENST00000233468 BTAF1O14981 1849 aa15.24■□□□□ 0.03
SF3B6-201ENST00000233468 ZNF316A6NFI3 1004 aaPredicted RBP15.23■□□□□ 0.03
SF3B6-201ENST00000233468 PTGER2P43116 358 aa15.23■□□□□ 0.03
SF3B6-201ENST00000233468 UTRNP46939 3433 aa15.22■□□□□ 0.03
SF3B6-201ENST00000233468 CNGB1Q14028 1251 aaPredicted RBP15.22■□□□□ 0.03
SF3B6-201ENST00000233468 RGPD2P0DJD1 1756 aa15.21■□□□□ 0.03
SF3B6-201ENST00000233468 SLC15A2Q16348 729 aa15.21■□□□□ 0.03
SF3B6-201ENST00000233468 RAPGEF4Q8WZA2 1011 aa15.21■□□□□ 0.03
SF3B6-201ENST00000233468 STK32BQ9NY57 414 aa15.21■□□□□ 0.03
SF3B6-201ENST00000233468 MTHFSP49914 203 aa15.2■□□□□ 0.02
SF3B6-201ENST00000233468 NBPF6Q5VWK0 638 aa15.2■□□□□ 0.02
SF3B6-201ENST00000233468 NBPF4Q96M43 638 aa15.2■□□□□ 0.02
SF3B6-201ENST00000233468 CFAP53Q96M91 514 aa15.2■□□□□ 0.02
SF3B6-201ENST00000233468 SPDYE4A6NLX3 237 aa15.19■□□□□ 0.02
SF3B6-201ENST00000233468 PAPPAQ13219 1627 aa15.18■□□□□ 0.02
SF3B6-201ENST00000233468 TATP17735 454 aaPredicted RBP15.18■□□□□ 0.02
SF3B6-201ENST00000233468 EIF4A2Q14240 407 aaKnown RBP15.18■□□□□ 0.02
SF3B6-201ENST00000233468 RALBP1Q15311 655 aa15.18■□□□□ 0.02
SF3B6-201ENST00000233468 CHRDL2Q6WN34 429 aa15.18■□□□□ 0.02
SF3B6-201ENST00000233468 FHDC1Q9C0D6 1143 aaPredicted RBP15.17■□□□□ 0.02
SF3B6-201ENST00000233468 LRRC4BQ9NT99 713 aa15.17■□□□□ 0.02
SF3B6-201ENST00000233468 ANKRD26Q9UPS8 1709 aa15.17■□□□□ 0.02
SF3B6-201ENST00000233468 DIAPH1O60610 1272 aaKnown RBP15.16■□□□□ 0.02
SF3B6-201ENST00000233468 ZNF827Q17R98 1081 aa15.16■□□□□ 0.02
SF3B6-201ENST00000233468 EYA1Q99502 592 aa15.16■□□□□ 0.02
SF3B6-201ENST00000233468 SGIP1Q9BQI5 828 aa15.16■□□□□ 0.02
SF3B6-201ENST00000233468 KCNQ4P56696 695 aa15.15■□□□□ 0.02
SF3B6-201ENST00000233468 ZCRB1Q8TBF4 217 aaKnown RBP15.15■□□□□ 0.02
SF3B6-201ENST00000233468 DDX54Q8TDD1 881 aaKnown RBP15.15■□□□□ 0.02
SF3B6-201ENST00000233468 SYT17Q9BSW7 474 aa15.15■□□□□ 0.02
SF3B6-201ENST00000233468 TUBGCP6Q96RT7 1819 aa15.15■□□□□ 0.02
SF3B6-201ENST00000233468 PITPNM1O00562 1244 aa15.14■□□□□ 0.01
SF3B6-201ENST00000233468 PPP2R1AP30153 589 aa15.14■□□□□ 0.01
SF3B6-201ENST00000233468 USHBP1Q8N6Y0 703 aa15.14■□□□□ 0.01
SF3B6-201ENST00000233468 MTFR1LQ9H019 292 aa15.14■□□□□ 0.01
SF3B6-201ENST00000233468 NUDCQ9Y266 331 aa15.14■□□□□ 0.01
SF3B6-201ENST00000233468 SHANK3Q9BYB0 1731 aa15.14■□□□□ 0.01
SF3B6-201ENST00000233468 PLEKHG2Q9H7P9 1386 aa15.13■□□□□ 0.01
SF3B6-201ENST00000233468 GOLGB1Q14789 3259 aaKnown RBP15.13■□□□□ 0.01
SF3B6-201ENST00000233468 FAM208AQ9UK61 1670 aaKnown RBP15.13■□□□□ 0.01
SF3B6-201ENST00000233468 IL13P35225 146 aa15.13■□□□□ 0.01
SF3B6-201ENST00000233468 SPG7Q9UQ90 795 aa15.13■□□□□ 0.01
SF3B6-201ENST00000233468 CHD4Q14839 1912 aa15.13■□□□□ 0.01
SF3B6-201ENST00000233468 IGSF1Q8N6C5 1336 aa15.13■□□□□ 0.01
SF3B6-201ENST00000233468 DOT1LQ8TEK3 1739 aa15.12■□□□□ 0.01
SF3B6-201ENST00000233468 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.12■□□□□ 0.013e-7■■■□□ 18.4
SF3B6-201ENST00000233468 PCDH11XQ9BZA7 1347 aa15.11■□□□□ 0.01
SF3B6-201ENST00000233468 PCDH11YQ9BZA8 1340 aa15.11■□□□□ 0.01
SF3B6-201ENST00000233468 AMOTQ4VCS5 1084 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms