RNA–Protein interactions for RNA: ENST00000218388.8

TIMP1-201, Transcript of TIMP metallopeptidase inhibitor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP1, Length 892 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1-201ENST00000218388 MYT1Q01538 1121 aa17.48■□□□□ 0.39
TIMP1-201ENST00000218388 FAM98CQ17RN3 349 aaKnown RBP17.48■□□□□ 0.39
TIMP1-201ENST00000218388 ADAMTS8Q9UP79 889 aa17.48■□□□□ 0.39
TIMP1-201ENST00000218388 MAPK8IP3Q9UPT6 1336 aa17.47■□□□□ 0.39
TIMP1-201ENST00000218388 OVOS2A0A0G2JMS6 1433 aa17.47■□□□□ 0.39
TIMP1-201ENST00000218388 PRKAR2BP31323 418 aa17.47■□□□□ 0.39
TIMP1-201ENST00000218388 FAM9BQ8IZU0 186 aa17.47■□□□□ 0.39
TIMP1-201ENST00000218388 PIAS4Q8N2W9 510 aaPredicted RBP17.47■□□□□ 0.39
TIMP1-201ENST00000218388 THSD7AQ9UPZ6 1657 aa17.47■□□□□ 0.39
TIMP1-201ENST00000218388 AMOTQ4VCS5 1084 aa17.46■□□□□ 0.39
TIMP1-201ENST00000218388 SPG7Q9UQ90 795 aa17.46■□□□□ 0.39
TIMP1-201ENST00000218388 PKD1L3Q7Z443 1732 aa17.46■□□□□ 0.39
TIMP1-201ENST00000218388 PLEKHO1Q53GL0 409 aaPredicted RBP17.45■□□□□ 0.38
TIMP1-201ENST00000218388 POTEAQ6S8J7 498 aa17.45■□□□□ 0.38
TIMP1-201ENST00000218388 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.45■□□□□ 0.38
TIMP1-201ENST00000218388 LRRC37A3O60309 1634 aa17.45■□□□□ 0.38
TIMP1-201ENST00000218388 EXOC5O00471 708 aa17.44■□□□□ 0.38
TIMP1-201ENST00000218388 ONECUT3O60422 494 aaPredicted RBP17.44■□□□□ 0.38
TIMP1-201ENST00000218388 DDB1Q16531 1140 aa17.44■□□□□ 0.38
TIMP1-201ENST00000218388 RUNDC1Q96C34 613 aa17.44■□□□□ 0.38
TIMP1-201ENST00000218388 TNS2Q63HR2 1409 aa17.44■□□□□ 0.38
TIMP1-201ENST00000218388 GAS2L2Q8NHY3 880 aa17.43■□□□□ 0.38
TIMP1-201ENST00000218388 ZCRB1Q8TBF4 217 aaKnown RBP17.43■□□□□ 0.38
TIMP1-201ENST00000218388 SEPT12Q8IYM1 358 aa17.42■□□□□ 0.38
TIMP1-201ENST00000218388 PLEKHF1Q96S99 279 aa17.42■□□□□ 0.38
TIMP1-201ENST00000218388 PCDH11XQ9BZA7 1347 aa17.42■□□□□ 0.38
TIMP1-201ENST00000218388 PCDH11YQ9BZA8 1340 aa17.42■□□□□ 0.38
TIMP1-201ENST00000218388 CCDC146Q8IYE0 955 aa17.41■□□□□ 0.38
TIMP1-201ENST00000218388 PDE3BQ13370 1112 aa17.4■□□□□ 0.38
TIMP1-201ENST00000218388 C1orf141Q5JVX7 400 aa17.4■□□□□ 0.38
TIMP1-201ENST00000218388 SHANK3Q9BYB0 1731 aa17.39■□□□□ 0.37
TIMP1-201ENST00000218388 ZNF530Q6P9A1 599 aaPredicted RBP17.39■□□□□ 0.37
TIMP1-201ENST00000218388 RGS12O14924 1447 aa17.38■□□□□ 0.37
TIMP1-201ENST00000218388 HSP90AB1P08238 724 aaKnown RBP17.38■□□□□ 0.37
TIMP1-201ENST00000218388 MTHFSDQ2M296 383 aaKnown RBP17.38■□□□□ 0.37
TIMP1-201ENST00000218388 IFNL2Q8IZJ0 200 aa17.38■□□□□ 0.37
TIMP1-201ENST00000218388 PHACTR3Q96KR7 559 aa17.38■□□□□ 0.37
TIMP1-201ENST00000218388 NFE2L2Q16236 605 aa17.37■□□□□ 0.37
TIMP1-201ENST00000218388 AKAP4Q5JQC9 854 aa17.37■□□□□ 0.37
TIMP1-201ENST00000218388 DDX54Q8TDD1 881 aaKnown RBP17.37■□□□□ 0.37
TIMP1-201ENST00000218388 BRWD3Q6RI45 1802 aa17.37■□□□□ 0.37
TIMP1-201ENST00000218388 PHKG2P15735 406 aa17.35■□□□□ 0.37
TIMP1-201ENST00000218388 LMOD3Q0VAK6 560 aa17.35■□□□□ 0.37
TIMP1-201ENST00000218388 KRT27Q7Z3Y8 459 aa17.35■□□□□ 0.37
TIMP1-201ENST00000218388 MAP3K5Q99683 1374 aa17.35■□□□□ 0.37
TIMP1-201ENST00000218388 DLG5Q8TDM6 1919 aa17.35■□□□□ 0.37
TIMP1-201ENST00000218388 GNAT3A8MTJ3 354 aa17.34■□□□□ 0.37
TIMP1-201ENST00000218388 APAF1O14727 1248 aa17.34■□□□□ 0.37
TIMP1-201ENST00000218388 CYP27B1O15528 508 aa17.34■□□□□ 0.37
TIMP1-201ENST00000218388 TMPOP42166 694 aaKnown RBP17.34■□□□□ 0.37
TIMP1-201ENST00000218388 RTF1Q92541 710 aaKnown RBP17.34■□□□□ 0.37
TIMP1-201ENST00000218388 HTATSF1O43719 755 aaKnown RBP17.33■□□□□ 0.36
TIMP1-201ENST00000218388 RIPK4P57078 832 aa17.33■□□□□ 0.36
TIMP1-201ENST00000218388 NGEFQ8N5V2 710 aa17.33■□□□□ 0.36
TIMP1-201ENST00000218388 MARCH10Q8NA82 808 aaPredicted RBP17.32■□□□□ 0.36
TIMP1-201ENST00000218388 VIRMAQ69YN4 1812 aaKnown RBP17.31■□□□□ 0.36
TIMP1-201ENST00000218388 NKX1-1Q15270 411 aaPredicted RBP17.31■□□□□ 0.36
TIMP1-201ENST00000218388 NEUROD2Q15784 382 aa17.31■□□□□ 0.36
TIMP1-201ENST00000218388 NCBP3Q53F19 620 aaKnown RBP17.31■□□□□ 0.36
TIMP1-201ENST00000218388 DCAF5Q96JK2 942 aa17.31■□□□□ 0.36
TIMP1-201ENST00000218388 SCN11AQ9UI33 1791 aa17.3■□□□□ 0.36
TIMP1-201ENST00000218388 RRP7AQ9Y3A4 280 aaKnown RBP17.3■□□□□ 0.36
TIMP1-201ENST00000218388 BCL9O00512 1426 aa17.3■□□□□ 0.36
TIMP1-201ENST00000218388 FAM196AQ6ZSG2 479 aa17.29■□□□□ 0.36
TIMP1-201ENST00000218388 DOT1LQ8TEK3 1739 aa17.28■□□□□ 0.36
TIMP1-201ENST00000218388 MPRIPQ6WCQ1 1025 aa17.28■□□□□ 0.36
TIMP1-201ENST00000218388 ADAMTS7Q9UKP4 1686 aa17.28■□□□□ 0.36
TIMP1-201ENST00000218388 KAT6BQ8WYB5 2073 aa17.27■□□□□ 0.36
TIMP1-201ENST00000218388 RNMTO43148 476 aaKnown RBP17.27■□□□□ 0.36
TIMP1-201ENST00000218388 CCDC27Q2M243 656 aa17.27■□□□□ 0.36
TIMP1-201ENST00000218388 KDM6AO15550 1401 aaPredicted RBP17.27■□□□□ 0.35
TIMP1-201ENST00000218388 ERVV-2B6SEH9 535 aa17.26■□□□□ 0.35
TIMP1-201ENST00000218388 HNRNPUQ00839 825 aaKnown RBP eCLIP17.26■□□□□ 0.35
TIMP1-201ENST00000218388 CALD1Q05682 793 aaKnown RBP17.26■□□□□ 0.35
TIMP1-201ENST00000218388 TOGARAM1Q9Y4F4 1720 aa17.25■□□□□ 0.35
TIMP1-201ENST00000218388 TEFQ10587 303 aa17.25■□□□□ 0.35
TIMP1-201ENST00000218388 MCM10Q7L590 875 aa17.25■□□□□ 0.35
TIMP1-201ENST00000218388 CEMIPQ8WUJ3 1361 aa17.25■□□□□ 0.35
TIMP1-201ENST00000218388 MRC1P22897 1456 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 ITGB4P16144 1822 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 SBF2Q86WG5 1849 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 NHSQ6T4R5 1651 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 CABP4P57796 275 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 FAM182BQ5T319 152 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 IL17REQ8NFR9 667 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 LGR6Q9HBX8 967 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 TRIM35Q9UPQ4 493 aa17.24■□□□□ 0.35
TIMP1-201ENST00000218388 SALL2Q9Y467 1007 aaPredicted RBP17.24■□□□□ 0.35
TIMP1-201ENST00000218388 DCTN1Q14203 1278 aa17.23■□□□□ 0.35
TIMP1-201ENST00000218388 SYTL4Q96C24 671 aaPredicted RBP17.23■□□□□ 0.35
TIMP1-201ENST00000218388 TMOD3Q9NYL9 352 aa17.23■□□□□ 0.35
TIMP1-201ENST00000218388 SENP3-EIF4A1A0A087X0R7 540 aa17.22■□□□□ 0.35
TIMP1-201ENST00000218388 WWC1Q8IX03 1113 aa17.22■□□□□ 0.35
TIMP1-201ENST00000218388 ACSBG1Q96GR2 724 aa17.22■□□□□ 0.35
TIMP1-201ENST00000218388 SLC52A2Q9HAB3 445 aa17.22■□□□□ 0.35
TIMP1-201ENST00000218388 SIPA1L3O60292 1781 aaPredicted RBP17.21■□□□□ 0.35
TIMP1-201ENST00000218388 PRIM1P49642 420 aaKnown RBP17.21■□□□□ 0.35
TIMP1-201ENST00000218388 WDR63Q8IWG1 891 aa17.2■□□□□ 0.34
TIMP1-201ENST00000218388 THUMPD2Q9BTF0 503 aaKnown RBP17.2■□□□□ 0.34
TIMP1-201ENST00000218388 TAF7Q15545 349 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms