RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 POTEAQ6S8J7 498 aa36.13■■■■□ 3.37
CHMP4B-201ENST00000217402 PHACTR3Q96KR7 559 aa36.13■■■■□ 3.37
CHMP4B-201ENST00000217402 MAPK8IP3Q9UPT6 1336 aa36.13■■■■□ 3.37
CHMP4B-201ENST00000217402 A0A0G2JS52 829 aa36.12■■■■□ 3.37
CHMP4B-201ENST00000217402 MYT1Q01538 1121 aa36.12■■■■□ 3.37
CHMP4B-201ENST00000217402 NEFMP07197 916 aa36.12■■■■□ 3.37
CHMP4B-201ENST00000217402 RUNDC1Q96C34 613 aa36.12■■■■□ 3.37
CHMP4B-201ENST00000217402 RBM6P78332 1123 aaKnown RBP36.11■■■■□ 3.37
CHMP4B-201ENST00000217402 CDCA7Q9BWT1 371 aaPredicted RBP36.1■■■■□ 3.37
CHMP4B-201ENST00000217402 SENP3-EIF4A1A0A087X0R7 540 aa36.07■■■■□ 3.36
CHMP4B-201ENST00000217402 RXRBP28702 533 aa36.07■■■■□ 3.36
CHMP4B-201ENST00000217402 THSD7AQ9UPZ6 1657 aa36.07■■■■□ 3.36
CHMP4B-201ENST00000217402 PLEKHO1Q53GL0 409 aaPredicted RBP36.06■■■■□ 3.36
CHMP4B-201ENST00000217402 LRRC37A3O60309 1634 aa36.05■■■■□ 3.36
CHMP4B-201ENST00000217402 PKD1L3Q7Z443 1732 aa36.05■■■■□ 3.36
CHMP4B-201ENST00000217402 MTHFSDQ2M296 383 aaKnown RBP36.05■■■■□ 3.36
CHMP4B-201ENST00000217402 ZCRB1Q8TBF4 217 aaKnown RBP36.05■■■■□ 3.36
CHMP4B-201ENST00000217402 AMOTQ4VCS5 1084 aa36.04■■■■□ 3.36
CHMP4B-201ENST00000217402 SPG7Q9UQ90 795 aa36.04■■■■□ 3.36
CHMP4B-201ENST00000217402 PLEKHG2Q9H7P9 1386 aa36.04■■■■□ 3.36
CHMP4B-201ENST00000217402 DDB1Q16531 1140 aa36.03■■■■□ 3.36
CHMP4B-201ENST00000217402 TNS2Q63HR2 1409 aa36.02■■■■□ 3.36
CHMP4B-201ENST00000217402 EXOC5O00471 708 aa36.01■■■■□ 3.36
CHMP4B-201ENST00000217402 APAF1O14727 1248 aa36.01■■■■□ 3.36
CHMP4B-201ENST00000217402 ONECUT3O60422 494 aaPredicted RBP36.01■■■■□ 3.36
CHMP4B-201ENST00000217402 ZNF530Q6P9A1 599 aaPredicted RBP36.01■■■■□ 3.36
CHMP4B-201ENST00000217402 SEPT12Q8IYM1 358 aa36.01■■■■□ 3.36
CHMP4B-201ENST00000217402 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP36.01■■■■□ 3.361e-8■■□□□ 12.9
CHMP4B-201ENST00000217402 RRP7AQ9Y3A4 280 aaKnown RBP36.01■■■■□ 3.35
CHMP4B-201ENST00000217402 GAS2L2Q8NHY3 880 aa35.99■■■■□ 3.35
CHMP4B-201ENST00000217402 SHANK3Q9BYB0 1731 aa35.98■■■■□ 3.35
CHMP4B-201ENST00000217402 DDX54Q8TDD1 881 aaKnown RBP35.98■■■■□ 3.35
CHMP4B-201ENST00000217402 PCDH11XQ9BZA7 1347 aa35.98■■■■□ 3.35
CHMP4B-201ENST00000217402 PCDH11YQ9BZA8 1340 aa35.98■■■■□ 3.35
CHMP4B-201ENST00000217402 NEUROD2Q15784 382 aa35.97■■■■□ 3.35
CHMP4B-201ENST00000217402 NFE2L2Q16236 605 aa35.97■■■■□ 3.35
CHMP4B-201ENST00000217402 TMPOP42166 694 aaKnown RBP35.95■■■■□ 3.35
CHMP4B-201ENST00000217402 CYP27B1O15528 508 aa35.94■■■■□ 3.34
CHMP4B-201ENST00000217402 C1orf141Q5JVX7 400 aa35.94■■■■□ 3.34
CHMP4B-201ENST00000217402 RGS12O14924 1447 aa35.94■■■■□ 3.34
CHMP4B-201ENST00000217402 PHKG2P15735 406 aa35.92■■■■□ 3.34
CHMP4B-201ENST00000217402 RIPK4P57078 832 aa35.91■■■■□ 3.34
CHMP4B-201ENST00000217402 PDE3BQ13370 1112 aa35.91■■■■□ 3.34
CHMP4B-201ENST00000217402 IFNL2Q8IZJ0 200 aa35.91■■■■□ 3.34
CHMP4B-201ENST00000217402 SALL2Q9Y467 1007 aaPredicted RBP35.91■■■■□ 3.34
CHMP4B-201ENST00000217402 MAP3K5Q99683 1374 aa35.9■■■■□ 3.34
CHMP4B-201ENST00000217402 AKAP4Q5JQC9 854 aa35.9■■■■□ 3.34
CHMP4B-201ENST00000217402 MARCH10Q8NA82 808 aaPredicted RBP35.88■■■■□ 3.33
CHMP4B-201ENST00000217402 DLG5Q8TDM6 1919 aa35.87■■■■□ 3.33
CHMP4B-201ENST00000217402 GNAT3A8MTJ3 354 aa35.87■■■■□ 3.33
CHMP4B-201ENST00000217402 HNRNPUQ00839 825 aaKnown RBP eCLIP35.86■■■■□ 3.33
CHMP4B-201ENST00000217402 BRWD3Q6RI45 1802 aa35.85■■■■□ 3.33
CHMP4B-201ENST00000217402 MPRIPQ6WCQ1 1025 aa35.85■■■■□ 3.33
CHMP4B-201ENST00000217402 FAM182BQ5T319 152 aa35.83■■■■□ 3.33
CHMP4B-201ENST00000217402 KRT27Q7Z3Y8 459 aa35.83■■■■□ 3.33
CHMP4B-201ENST00000217402 RTF1Q92541 710 aaKnown RBP35.83■■■■□ 3.33
CHMP4B-201ENST00000217402 YTHDC1Q96MU7 727 aaKnown RBP35.83■■■■□ 3.33
CHMP4B-201ENST00000217402 DCTN1Q14203 1278 aa35.82■■■■□ 3.32
CHMP4B-201ENST00000217402 TRIM35Q9UPQ4 493 aa35.82■■■■□ 3.32
CHMP4B-201ENST00000217402 MCM10Q7L590 875 aa35.81■■■■□ 3.32
CHMP4B-201ENST00000217402 KDM6AO15550 1401 aaPredicted RBP35.8■■■■□ 3.32
CHMP4B-201ENST00000217402 HSP90AB1P08238 724 aaKnown RBP35.8■■■■□ 3.32
CHMP4B-201ENST00000217402 LMOD3Q0VAK6 560 aa35.8■■■■□ 3.32
CHMP4B-201ENST00000217402 NKX1-1Q15270 411 aaPredicted RBP35.79■■■■□ 3.32
CHMP4B-201ENST00000217402 THUMPD2Q9BTF0 503 aaKnown RBP35.79■■■■□ 3.32
CHMP4B-201ENST00000217402 LGR6Q9HBX8 967 aa35.79■■■■□ 3.32
CHMP4B-201ENST00000217402 DCAF5Q96JK2 942 aa35.78■■■■□ 3.32
CHMP4B-201ENST00000217402 HTATSF1O43719 755 aaKnown RBP35.77■■■■□ 3.32
CHMP4B-201ENST00000217402 RNMTO43148 476 aaKnown RBP35.76■■■■□ 3.32
CHMP4B-201ENST00000217402 IL17REQ8NFR9 667 aa35.76■■■■□ 3.32
CHMP4B-201ENST00000217402 CCDC27Q2M243 656 aa35.74■■■■□ 3.31
CHMP4B-201ENST00000217402 WWC1Q8IX03 1113 aa35.74■■■■□ 3.31
CHMP4B-201ENST00000217402 NGEFQ8N5V2 710 aa35.73■■■■□ 3.31
CHMP4B-201ENST00000217402 TOGARAM1Q9Y4F4 1720 aa35.73■■■■□ 3.31
CHMP4B-201ENST00000217402 ADAMTS7Q9UKP4 1686 aa35.73■■■■□ 3.31
CHMP4B-201ENST00000217402 SCN11AQ9UI33 1791 aa35.72■■■■□ 3.31
CHMP4B-201ENST00000217402 NCBP3Q53F19 620 aaKnown RBP35.72■■■■□ 3.31
CHMP4B-201ENST00000217402 DOT1LQ8TEK3 1739 aa35.71■■■■□ 3.31
CHMP4B-201ENST00000217402 CEMIPQ8WUJ3 1361 aa35.71■■■■□ 3.31
CHMP4B-201ENST00000217402 VIRMAQ69YN4 1812 aaKnown RBP35.71■■■■□ 3.31
CHMP4B-201ENST00000217402 ACSBG1Q96GR2 724 aa35.7■■■■□ 3.31
CHMP4B-201ENST00000217402 TEFQ10587 303 aa35.67■■■■□ 3.3
CHMP4B-201ENST00000217402 SYTL4Q96C24 671 aaPredicted RBP35.67■■■■□ 3.3
CHMP4B-201ENST00000217402 CABP4P57796 275 aa35.65■■■■□ 3.3
CHMP4B-201ENST00000217402 MRC1P22897 1456 aa35.65■■■■□ 3.3
CHMP4B-201ENST00000217402 ERVV-2B6SEH9 535 aa35.65■■■■□ 3.3
CHMP4B-201ENST00000217402 FAM196AQ6ZSG2 479 aa35.65■■■■□ 3.3
CHMP4B-201ENST00000217402 SLC52A2Q9HAB3 445 aa35.65■■■■□ 3.3
CHMP4B-201ENST00000217402 ZNF521Q96K83 1311 aa35.64■■■■□ 3.3
CHMP4B-201ENST00000217402 BCL9O00512 1426 aa35.64■■■■□ 3.3
CHMP4B-201ENST00000217402 PRIM1P49642 420 aaKnown RBP35.64■■■■□ 3.3
CHMP4B-201ENST00000217402 NFATC2IPQ8NCF5 419 aa35.63■■■■□ 3.29
CHMP4B-201ENST00000217402 ZBED9Q6R2W3 1325 aa35.63■■■■□ 3.29
CHMP4B-201ENST00000217402 TMOD3Q9NYL9 352 aa35.61■■■■□ 3.29
CHMP4B-201ENST00000217402 KCNQ2O43526 872 aa35.61■■■■□ 3.29
CHMP4B-201ENST00000217402 CALD1Q05682 793 aaKnown RBP35.61■■■■□ 3.29
CHMP4B-201ENST00000217402 LAS1LQ9Y4W2 734 aaKnown RBP35.61■■■■□ 3.29
CHMP4B-201ENST00000217402 KAT6BQ8WYB5 2073 aa35.6■■■■□ 3.29
CHMP4B-201ENST00000217402 ITGB4P16144 1822 aa35.59■■■■□ 3.29
CHMP4B-201ENST00000217402 WDR63Q8IWG1 891 aa35.59■■■■□ 3.29
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms