RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PMS2P54278 862 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 UBE2IP63279 158 aaKnown RBP14.8□□□□□ -0.04
SYNE2-228ENST00000639659 KLHL30Q0D2K2 578 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 CHAF1BQ13112 559 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 IHHQ14623 411 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 CRTC2Q53ET0 693 aaPredicted RBP14.8□□□□□ -0.04
SYNE2-228ENST00000639659 ANKRD20A8PQ5CZ79 823 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 HENMT1Q5T8I9 393 aaKnown RBP14.8□□□□□ -0.04
SYNE2-228ENST00000639659 CACHD1Q5VU97 1274 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 TMEM26Q6ZUK4 368 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 NLRP8Q86W28 1048 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 TEX26Q8N6G2 289 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 CPT1CQ8TCG5 803 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 CT55Q8WUE5 264 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 RSC1A1Q92681 617 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 TRIM11Q96F44 468 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 WDR24Q96S15 920 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 CARD9Q9H257 536 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 HAUS2Q9NVX0 235 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 DDX3XO00571 662 aaKnown RBP eCLIP14.79□□□□□ -0.04
SYNE2-228ENST00000639659 MTX2O75431 263 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 SPAG6O75602 509 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 CREG1O75629 220 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 SLC25A14O95258 325 aaPredicted RBP14.79□□□□□ -0.04
SYNE2-228ENST00000639659 C9P02748 559 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 HLA-DQB2P05538 268 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 CD48P09326 243 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 SKILP12757 684 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 RPL10P27635 214 aaKnown RBP14.79□□□□□ -0.04
SYNE2-228ENST00000639659 GARSP41250 739 aaKnown RBP14.79□□□□□ -0.04
SYNE2-228ENST00000639659 RPS18P62269 152 aaKnown RBP14.79□□□□□ -0.04
SYNE2-228ENST00000639659 NIPAL4Q0D2K0 466 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 GALNT3Q14435 633 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 E4F1Q66K89 784 aaPredicted RBP14.79□□□□□ -0.04
SYNE2-228ENST00000639659 TIGD7Q6NT04 549 aaPredicted RBP14.79□□□□□ -0.04
SYNE2-228ENST00000639659 PPP1R3BQ86XI6 285 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 AOPEPQ8N6M6 819 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 CXorf40BQ96DE9 158 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 RUFY1Q96T51 708 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 TRIM55Q9BYV6 548 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 ACTL8Q9H568 366 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 ZNF768Q9H5H4 540 aaKnown RBP14.79□□□□□ -0.04
SYNE2-228ENST00000639659 ANO10Q9NW15 660 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 PADI1Q9ULC6 663 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 GTF3C3Q9Y5Q9 886 aa14.79□□□□□ -0.04
SYNE2-228ENST00000639659 OR52A4PA6NMU1 304 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 PRLP01236 227 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 PIRTP0C851 137 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 MYBL1P10243 752 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 SLC19A1P41440 591 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 CD86P42081 329 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 PGDP52209 483 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 DRG2P55039 364 aaKnown RBP14.78□□□□□ -0.04
SYNE2-228ENST00000639659 GALNT2Q10471 571 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 IL11RAQ14626 422 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 STX1AQ16623 288 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 QPCTQ16769 361 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 FAM182AQ5T1J6 154 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 CPZQ66K79 652 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 NCBP2-AS2Q69YL0 99 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 CAPRIN2Q6IMN6 1127 aaKnown RBP14.78□□□□□ -0.04
SYNE2-228ENST00000639659 TEKT4Q8WW24 435 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 MLPHQ9BV36 600 aaPredicted RBP14.78□□□□□ -0.04
SYNE2-228ENST00000639659 LHX9Q9NQ69 397 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 DTLQ9NZJ0 730 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 LUZP4Q9P127 313 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 ZNF624Q9P2J8 865 aaPredicted RBP14.78□□□□□ -0.04
SYNE2-228ENST00000639659 ANAPC7Q9UJX3 599 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 MYO6Q9UM54 1294 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 SHOC2Q9UQ13 582 aa14.78□□□□□ -0.04
SYNE2-228ENST00000639659 ARGFXA6NJG6 315 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 MATN3O15232 486 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 TIAF1O95411 115 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 GZMAP12544 262 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 IL4RP24394 825 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 CAPZBP47756 277 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 SLC25A11Q02978 314 aaKnown RBP14.77□□□□□ -0.05
SYNE2-228ENST00000639659 TUBB3Q13509 450 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 GPR18Q14330 331 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 PIGHQ14442 188 aaPredicted RBP14.77□□□□□ -0.05
SYNE2-228ENST00000639659 KCNAB1Q14722 419 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 IFI16Q16666 785 aaKnown RBP14.77□□□□□ -0.05
SYNE2-228ENST00000639659 NADK2Q4G0N4 442 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 ZFYVE27Q5T4F4 411 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 APTXQ7Z2E3 356 aaKnown RBP14.77□□□□□ -0.05
SYNE2-228ENST00000639659 SIDT2Q8NBJ9 832 aaKnown RBP14.77□□□□□ -0.05
SYNE2-228ENST00000639659 CCNYQ8ND76 341 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 ARRDC2Q8TBH0 407 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 SSC4DQ8WTU2 575 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 SLC25A23Q9BV35 468 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 PDE7BQ9NP56 450 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 CASS4Q9NQ75 786 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 SLC23A2Q9UGH3 650 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 RARRES3Q9UL19 164 aa14.77□□□□□ -0.05
SYNE2-228ENST00000639659 NOTCH2Q04721 2471 aa14.76□□□□□ -0.05
SYNE2-228ENST00000639659 SPENQ96T58 3664 aaKnown RBP14.76□□□□□ -0.05
SYNE2-228ENST00000639659 MT-ND3P03897 115 aa14.76□□□□□ -0.05
SYNE2-228ENST00000639659 ZNF7P17097 686 aaPredicted RBP14.76□□□□□ -0.05
SYNE2-228ENST00000639659 XRCC1P18887 633 aaPredicted RBP14.76□□□□□ -0.05
SYNE2-228ENST00000639659 CES1P23141 567 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms