RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PRICKLE2Q7Z3G6 844 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 TMC3Q7Z5M5 1100 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 GAS2L3Q86XJ1 694 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 PLXDC1Q8IUK5 500 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 HTR3CQ8WXA8 447 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 PMEPA1Q969W9 287 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 TADA1Q96BN2 335 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 RTP4Q96DX8 246 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 SPATA16Q9BXB7 569 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 ATXN10Q9UBB4 475 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 CPNE7Q9UBL6 633 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 TUBD1Q9UJT1 453 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 PILRAQ9UKJ1 303 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 PRKAB1Q9Y478 270 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 C3orf70A6NLC5 250 aaPredicted RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 ZNF891A8MT65 544 aaPredicted RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 TPM1P09493 284 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 FAM87AP0C7U9 286 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 ZNF8P17098 575 aaPredicted RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 XRCC1P18887 633 aaPredicted RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 SLC1A1P43005 524 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 UBE2IP63279 158 aaKnown RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 CDK18Q07002 472 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 NFATC2Q13469 925 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 GALNT3Q14435 633 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 ODF2Q5BJF6 829 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 ANKS6Q68DC2 871 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 CCDC70Q6NSX1 233 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 ATG14Q6ZNE5 492 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 ZNF761Q86XN6 746 aaPredicted RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 NLGN4XQ8N0W4 816 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 NLGN4YQ8NFZ3 816 aaPredicted RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 LRRN4Q8WUT4 740 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 NCSTNQ92542 709 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 GLYATL1Q969I3 302 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 KIAA1143Q96AT1 154 aaPredicted RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 EID2BQ96D98 161 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 SLC45A3Q96JT2 553 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 SPRY4Q9C004 299 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 SLC25A18Q9H1K4 315 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 DDX56Q9NY93 547 aaKnown RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 ZNF711Q9Y462 761 aa18.19■□□□□ 0.5
CLN3-241ENST00000635861 TMEM184BQ9Y519 407 aaPredicted RBP18.19■□□□□ 0.5
CLN3-241ENST00000635861 KMOO15229 486 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 TOX3O15405 576 aaPredicted RBP18.18■□□□□ 0.5
CLN3-241ENST00000635861 VEGFDO43915 354 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 LIFP15018 202 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 CSRP3P50461 194 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 MAP7Q14244 749 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 RBM12BQ8IXT5 1001 aaKnown RBP18.18■□□□□ 0.5
CLN3-241ENST00000635861 GPR26Q8NDV2 337 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 DTX3LQ8TDB6 740 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 JPH3Q8WXH2 748 aaPredicted RBP18.18■□□□□ 0.5
CLN3-241ENST00000635861 PLEKHG4BQ96PX9 1271 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 VPS35Q96QK1 796 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 TIMM29Q9BSF4 260 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 GPR63Q9BZJ6 419 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 OR2AG1Q9H205 316 aa18.18■□□□□ 0.5
CLN3-241ENST00000635861 SNX2O60749 519 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 NDST3O95803 873 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 NOP2P46087 812 aaKnown RBP18.17■□□□□ 0.5
CLN3-241ENST00000635861 NR2C2P49116 596 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 CYP4F2P78329 520 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 ABHD18Q0P651 414 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 TCEAL1Q15170 157 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 CRTC2Q53ET0 693 aaPredicted RBP18.17■□□□□ 0.5
CLN3-241ENST00000635861 TEX44Q53QW1 395 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 ADGRG6Q86SQ4 1221 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 LRRTM4Q86VH4 590 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 RHOT1Q8IXI2 618 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 CCDC42Q96M95 316 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 AGAP3Q96P47 875 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 KLC4Q9NSK0 619 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 INTUQ9ULD6 942 aa18.17■□□□□ 0.5
CLN3-241ENST00000635861 A0A0A6YYK5 440 aaPredicted RBP18.16■□□□□ 0.5
CLN3-241ENST00000635861 A8MU76 341 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 TERTO14746 1132 aaKnown RBP18.16■□□□□ 0.5
CLN3-241ENST00000635861 SUV39H1O43463 412 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 C9P02748 559 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 INSCQ1MX18 579 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 SNAP47Q5SQN1 464 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 ZDHHC20Q5W0Z9 365 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 WASH2PQ6VEQ5 465 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 TMEM26Q6ZUK4 368 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 RFX6Q8HWS3 928 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 OSGEPL1Q9H4B0 414 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 TRABDQ9H4I3 376 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 GLOD4Q9HC38 313 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 WASH6PQ9NQA3 447 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 PRDM8Q9NQV8 689 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 ABHD10Q9NUJ1 306 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 POT1Q9NUX5 634 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.16■□□□□ 0.5
CLN3-241ENST00000635861 SHOC2Q9UQ13 582 aa18.16■□□□□ 0.5
CLN3-241ENST00000635861 PRR19A6NJB7 356 aa18.15■□□□□ 0.5
CLN3-241ENST00000635861 POLR1CO15160 346 aaPredicted RBP18.15■□□□□ 0.5
CLN3-241ENST00000635861 MTSS1O43312 755 aa18.15■□□□□ 0.5
CLN3-241ENST00000635861 KCNJ13O60928 360 aa18.15■□□□□ 0.5
CLN3-241ENST00000635861 VIPP01282 170 aa18.15■□□□□ 0.5
CLN3-241ENST00000635861 KRT1P04264 644 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms