RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 ITGA2P17301 1181 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 DSG3P32926 999 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 GP5P40197 560 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 SLC15A1P46059 708 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 NPY2RP49146 381 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 NUBP1P53384 320 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 C21orf58P58505 322 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 ENPEPQ07075 957 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 PRKAA1Q13131 559 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 FASTKQ14296 549 aaKnown RBP7.87□□□□□ -1.15
VPS11-209ENST00000622309 CBX2Q14781 532 aaPredicted RBP7.87□□□□□ -1.15
VPS11-209ENST00000622309 MFSD13AQ14CX5 517 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 MEP1AQ16819 746 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 DPY19L1Q2PZI1 675 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 SMTNL2Q2TAL5 461 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 PARP15Q460N3 678 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 PPP1R26Q5T8A7 1209 aaPredicted RBP7.87□□□□□ -1.15
VPS11-209ENST00000622309 TTC23Q5W5X9 447 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 MAMDC2Q7Z304 686 aaPredicted RBP7.87□□□□□ -1.15
VPS11-209ENST00000622309 VN1R5Q7Z5H4 357 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 KIF18BQ86Y91 864 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 BBS7Q8IWZ6 715 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 OR8K3Q8NH51 312 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 GTF3C2Q8WUA4 911 aaPredicted RBP7.87□□□□□ -1.15
VPS11-209ENST00000622309 CIDECQ96AQ7 238 aaPredicted RBP7.87□□□□□ -1.15
VPS11-209ENST00000622309 GATA5Q9BWX5 397 aaPredicted RBP7.87□□□□□ -1.15
VPS11-209ENST00000622309 DCSTAMPQ9H295 470 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 ZNF385DQ9H6B1 395 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 TMEM181Q9P2C4 612 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 SLC9A2Q9UBY0 812 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 SNX6Q9UNH7 406 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 PCDHGB6Q9Y5F9 930 aa7.87□□□□□ -1.15
VPS11-209ENST00000622309 USP17L10C9JJH3 530 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 K7ENM7 598 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 BTN3A3O00478 584 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 INPP4BO15327 924 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 SULT1B1O43704 296 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 PGRP06401 933 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 S100A6P06703 90 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 ZNF250P15622 560 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 KELP23276 732 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 PLD1Q13393 1074 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 UGP2Q16851 508 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 TREML2Q5T2D2 321 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 TYW3Q6IPR3 259 aaKnown RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 TMEM65Q6PI78 240 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 NRARPQ7Z6K4 114 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 UNC5BQ8IZJ1 945 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 AMER2Q8N7J2 671 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 FNDC5Q8NAU1 212 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 FBXL13Q8NEE6 735 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 TRPM4Q8TD43 1214 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 UBASH3BQ8TF42 649 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 SLC7A6Q92536 515 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 ZNF578Q96N58 590 aaPredicted RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 MCEEQ96PE7 176 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 CBWD1Q9BRT8 395 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 BTBD2Q9BX70 525 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 RIOX1Q9H6W3 641 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 RBAKQ9NYW8 714 aaPredicted RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 DTLQ9NZJ0 730 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 PAK5Q9P286 719 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 OPTCQ9UBM4 332 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 CCDC182A6NF36 153 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 ZNF98A6NK75 572 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 EFCAB9A8MZ26 197 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 F8W810 466 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 AXIN1O15169 862 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 GREM1O60565 184 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 RASGRP1O95267 797 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 GOT2P00505 430 aaKnown RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 GPIP06744 558 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 SNRPB2P08579 225 aaKnown RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 THRBP10828 461 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 TNNI3P19429 210 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 CDH5P33151 784 aaPredicted RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 RFC2P35250 354 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 S100A12P80511 92 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 MGAT3Q09327 533 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 GPR50Q13585 617 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 DNAJC24Q6P3W2 148 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 PRSS42Q7Z5A4 293 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 LRRC71Q8N4P6 559 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 ZBTB44Q8NCP5 570 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 EBNA1BP2Q99848 306 aaKnown RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 WACQ9BTA9 647 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 TRAF4Q9BUZ4 470 aaPredicted RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 FAM49AQ9H0Q0 323 aaPredicted RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 KAT8Q9H7Z6 458 aaKnown RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 ACSS2Q9NR19 701 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 GMPR2Q9P2T1 348 aaKnown RBP7.86□□□□□ -1.15
VPS11-209ENST00000622309 GIMAP2Q9UG22 337 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 MKLN1Q9UL63 735 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 KLHL20Q9Y2M5 609 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 HSPB11Q9Y547 144 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 SNX8Q9Y5X2 465 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 SNED1Q8TER0 1413 aa7.86□□□□□ -1.15
VPS11-209ENST00000622309 ATP6AP2A0A1C7CYW4 349 aa7.85□□□□□ -1.15
VPS11-209ENST00000622309 TISP43B9A030 160 aa7.85□□□□□ -1.15
VPS11-209ENST00000622309 GRID2O43424 1007 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms