RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TIMM23O14925 209 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 WDHD1O75717 1129 aaPredicted RBP5.09□□□□□ -1.59
VPS29-212ENST00000621131 F7P08709 466 aaPredicted RBP5.09□□□□□ -1.59
VPS29-212ENST00000621131 CCDC192P0DO97 292 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 SCG2P13521 617 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 MYF6P23409 242 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 NLRP5P59047 1200 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 CEBPZQ03701 1054 aaKnown RBP5.09□□□□□ -1.59
VPS29-212ENST00000621131 TROAPQ12815 778 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 CAPSQ13938 189 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 TRIM14Q14142 442 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 CCDC96Q2M329 555 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 KRTAP27-1Q3LI81 207 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 GPATCH4Q5T3I0 446 aaKnown RBP5.09□□□□□ -1.59
VPS29-212ENST00000621131 ANO1Q5XXA6 986 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 CCDC174Q6PII3 467 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 SASS6Q6UVJ0 657 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 TMEM179Q6ZVK1 233 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 DIS3L2Q8IYB7 885 aaKnown RBP5.09□□□□□ -1.59
VPS29-212ENST00000621131 VPS37AQ8NEZ2 397 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 THAP4Q8WY91 577 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 MRPS27Q92552 414 aaKnown RBP5.09□□□□□ -1.59
VPS29-212ENST00000621131 ADGRG7Q96K78 797 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 INPP4AQ96PE3 977 aaPredicted RBP5.09□□□□□ -1.59
VPS29-212ENST00000621131 TMEM47Q9BQJ4 181 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 GLT8D2Q9H1C3 349 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 TNMDQ9H2S6 317 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 SH2D4AQ9H788 454 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 GRPEL1Q9HAV7 217 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 C6orf50Q9HD87 102 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 DERAQ9Y315 318 aa5.09□□□□□ -1.59
VPS29-212ENST00000621131 SCN9AQ15858 1988 aa5.09□□□□□ -1.6
VPS29-212ENST00000621131 LAMA2P24043 3122 aaKnown RBP5.08□□□□□ -1.6
VPS29-212ENST00000621131 CCDC194A0A1B0GVG4 234 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 SYCE3A1L190 88 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 GLTPD2A6NH11 291 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 YDJCA8MPS7 323 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 CYSRT1A8MQ03 144 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 KLRF2D3W0D1 207 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 LINC01565O15544 149 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 SLC25A17O43808 307 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 NMT2O60551 498 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 GAS8-AS1O95177 125 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 PLEKHA8P1O95397 391 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 VNN2O95498 520 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 CAVIN2O95810 425 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 CD72P21854 359 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 U2AF2P26368 475 aaKnown RBP eCLIP5.08□□□□□ -1.62e-6■■□□□ 11.9
VPS29-212ENST00000621131 GNA11P29992 359 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 FMO4P31512 558 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 TTKP33981 857 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 TRAPPC10P48553 1259 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 ARSFP54793 590 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 TCP10Q12799 353 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 DLG1Q12959 904 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 XKR9Q5GH70 373 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 FKBP1CQ5VVH2 108 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 ADALQ6DHV7 355 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 APOBEC3HQ6NTF7 200 aaKnown RBP5.08□□□□□ -1.6
VPS29-212ENST00000621131 ZNF771Q7L3S4 317 aaPredicted RBP5.08□□□□□ -1.6
VPS29-212ENST00000621131 AADATQ8N5Z0 425 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 TRIB2Q92519 343 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 SCMH1Q96GD3 660 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 USP28Q96RU2 1077 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 YME1L1Q96TA2 773 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 PYM1Q9BRP8 204 aaKnown RBP5.08□□□□□ -1.6
VPS29-212ENST00000621131 SPZ1Q9BXG8 430 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 CLSTN2Q9H4D0 955 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 TDRD3Q9H7E2 651 aaKnown RBP5.08□□□□□ -1.6
VPS29-212ENST00000621131 VEZTQ9HBM0 779 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 DDX4Q9NQI0 724 aaKnown RBP5.08□□□□□ -1.6
VPS29-212ENST00000621131 KIF17Q9P2E2 1029 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 CLIP2Q9UDT6 1046 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 RCOR1Q9UKL0 485 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 COL4A5P29400 1685 aa5.08□□□□□ -1.6
VPS29-212ENST00000621131 TCHHQ07283 1943 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 MYH4Q9Y623 1939 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 FSD2A1L4K1 749 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 MAGEA13PA6NCF6 341 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 PRSS47A8MTI9 375 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 TCP10L2B9ZVM9 353 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 NPIPB11E5RHQ5 1161 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 STX16-NPEPL1H3BU86 382 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 STX16O14662 325 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 BUB3O43684 328 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 HBP1O60381 514 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 CH25HO95992 272 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 ADAP00813 363 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 IGLV2-11P01706 119 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 TK1P04183 234 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 AKR1B1P15121 316 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 RPL3P39023 403 aaKnown RBP5.07□□□□□ -1.6
VPS29-212ENST00000621131 NAPAP54920 295 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 TPM4P67936 248 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 GABPAQ06546 454 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 CCDC173Q0VFZ6 552 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 IKQ13123 557 aaPredicted RBP5.07□□□□□ -1.6
VPS29-212ENST00000621131 SNTA1Q13424 505 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 POSTNQ15063 836 aa5.07□□□□□ -1.6
VPS29-212ENST00000621131 SETMARQ53H47 684 aaPredicted RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms