RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ELNP15502 786 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 NCK1P16333 377 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 TPP2P29144 1249 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 BUD31P41223 144 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 COPZ1P61923 177 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 JAG1P78504 1218 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 NAE1Q13564 534 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ANXA8L1Q5VT79 327 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 TMEM110Q86TL2 294 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 BORCS5Q969J3 196 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 B3GALT6Q96L58 329 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 C12orf42Q96LP6 360 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 CXorf21Q9HAI6 301 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 DNAJC11Q9NVH1 559 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 KIAA1522Q9P206 1035 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 PTGFRNQ9P2B2 879 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 CFAP97Q9P2B7 532 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ATXN10Q9UBB4 475 aa13.92□□□□□ -0.18
CPSF1-212ENST00000616140 CNOT6Q9ULM6 557 aaKnown RBP13.92□□□□□ -0.18
CPSF1-212ENST00000616140 ATRNL1Q5VV63 1379 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 KDM4FA0A1W2PPD8 638 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 CBFA2T3O75081 653 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 F7P08709 466 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-212ENST00000616140 BMP7P18075 431 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 CDH3P22223 829 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 CCNHP51946 323 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-212ENST00000616140 IRF9Q00978 393 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 MTAPQ13126 283 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 SLCO6A1Q86UG4 719 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 ANKRD46Q86W74 232 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 OR52L1Q8NGH7 329 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 SLC38A2Q96QD8 506 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 MYOCQ99972 504 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 PIGVQ9NUD9 493 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 FKBPLQ9UIM3 349 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 DLG5Q8TDM6 1919 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 A0A1B0GVM2 712 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 TCAF2A6NFQ2 919 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 ITM2AO43736 263 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 CAPN15O75808 1086 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 STBD1O95210 358 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 UROSP10746 265 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 IGFBP5P24593 272 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 MANFP55145 182 aaKnown RBP13.91□□□□□ -0.18
CPSF1-212ENST00000616140 SMARCB1Q12824 385 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 TRAP1Q12931 704 aaKnown RBP13.91□□□□□ -0.18
CPSF1-212ENST00000616140 CCDC157Q569K6 752 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 TMPRSS11BQ86T26 416 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 ARL10Q8N8L6 244 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 NAT14Q8WUY8 206 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 S100ZQ8WXG8 99 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 UPF1Q92900 1129 aaKnown RBP eCLIP13.91□□□□□ -0.18
CPSF1-212ENST00000616140 OMA1Q96E52 524 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 FNDC11Q9BVV2 318 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 C1QTNF3-AMACRE9PGA6 284 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 H0YGN5 161 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 H3BNX3 289 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 NPHS1O60500 1241 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 CKMT2P17540 419 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 BIKQ13323 160 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 DENND5AQ6IQ26 1287 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-212ENST00000616140 BRSK1Q8TDC3 778 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 MAF1Q9H063 256 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 MAGEH1Q9H213 219 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 CLEC4MQ9H2X3 399 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-212ENST00000616140 SGK2Q9HBY8 427 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 C8orf4Q9NR00 106 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 PDP1Q9P0J1 537 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-212ENST00000616140 POLR1DQ9Y2S0 133 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 N6AMT1Q9Y5N5 214 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 NFS1Q9Y697 457 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 SQORQ9Y6N5 450 aa13.91□□□□□ -0.18
CPSF1-212ENST00000616140 ISM1B1AKI9 464 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 ANGPTL1O95841 491 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 FADS2O95864 444 aaKnown RBP13.9□□□□□ -0.18
CPSF1-212ENST00000616140 WARSP23381 471 aaKnown RBP13.9□□□□□ -0.18
CPSF1-212ENST00000616140 GLUD2P49448 558 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 SKP1P63208 163 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 KLF1Q13351 362 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-212ENST00000616140 ARMC3Q5W041 872 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 PTCHD4Q6ZW05 846 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 SIAH1Q8IUQ4 282 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 COLGALT2Q8IYK4 626 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 SMYD1Q8NB12 490 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 OR10A6Q8NH74 314 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 TRIM63Q969Q1 353 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 ZSCAN32Q9NX65 697 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 GALNT8Q9NY28 637 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 MRPL39Q9NYK5 338 aaKnown RBP13.9□□□□□ -0.18
CPSF1-212ENST00000616140 NCKAP1Q9Y2A7 1128 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 SERPINA1P01009 418 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 IL12AP29459 219 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 SLC18A1P54219 525 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 LDLRAP1Q5SW96 308 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 ATG14Q6ZNE5 492 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 CLEC20AQ6ZU45 233 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 ADI1Q9BV57 179 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 IGFLR1Q9H665 355 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 COQ10BQ9H8M1 238 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms