RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SIDT1Q9NXL6 827 aaKnown RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 CWC15Q9P013 229 aaKnown RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 EPHA6Q9UF33 1036 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 PCSK1NQ9UHG2 260 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 LCMT1Q9UIC8 334 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 LNPEPQ9UIQ6 1025 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 PLAAQ9Y263 795 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 SIK3Q9Y2K2 1263 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 TMEM98Q9Y2Y6 226 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ZNF451Q9Y4E5 1061 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ESPL1Q14674 2120 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ANKRD36A6QL64 1941 aa6.21□□□□□ -1.41
CUX1-220ENST00000607092 FAM170AA1A519 330 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 CDC14CA4D256 554 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 KLHL33A6NCF5 533 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 A6NCN8 305 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 KMOO15229 486 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 GRID2O43424 1007 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 NUAK1O60285 661 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 SNX2O60749 519 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 DPM1O60762 260 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 DNAJC6O75061 913 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 UBXN7O94888 489 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 IGHEP01854 428 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 KRT7P08729 469 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 ACP5P13686 325 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 IDSP22304 550 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 POLD2P49005 469 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 RRADP55042 308 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 MYL5Q02045 173 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 PTSQ03393 145 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 UBXN1Q04323 297 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 SEMA5AQ13591 1074 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 ERV3-1Q14264 604 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 CHRNA6Q15825 494 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 HADHQ16836 314 aaKnown RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 SKOR2Q2VWA4 1001 aaPredicted RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 TMTC4Q5T4D3 741 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 AGAP9Q5VTM2 703 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 ZDHHC20Q5W0Z9 365 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 ALG1LQ6GMV1 187 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 CAPRIN2Q6IMN6 1127 aaKnown RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 CCDC70Q6NSX1 233 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 WASH2PQ6VEQ5 465 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 TMEM26Q6ZUK4 368 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 NYAP1Q6ZVC0 841 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 SYVN1Q86TM6 617 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 LRRTM4Q86VH4 590 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 MAP7D3Q8IWC1 876 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 UNC5BQ8IZJ1 945 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 PELI3Q8N2H9 469 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 TEX26Q8N6G2 289 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 NPWQ8N729 165 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 BEND7Q8N7W2 519 aaPredicted RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 PIH1D2Q8WWB5 315 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 SCAMP4Q969E2 229 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 ZNF830Q96NB3 372 aaPredicted RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 IP6K3Q96PC2 410 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 GBP4Q96PP9 640 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 OR6C1Q96RD1 312 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 CD180Q99467 661 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 C17orf62Q9BQA9 187 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 TIMM29Q9BSF4 260 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 SLC25A23Q9BV35 468 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 ZCCHC2Q9C0B9 1178 aaKnown RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 TRIM39Q9HCM9 518 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 NT5MQ9NPB1 228 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 WASH6PQ9NQA3 447 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 ACSS2Q9NR19 701 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.21□□□□□ -1.423e-6■□□□□ 8.8
CUX1-220ENST00000607092 ANO10Q9NW15 660 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.21□□□□□ -1.421e-7■■■■□ 23.3
CUX1-220ENST00000607092 TMEM9Q9P0T7 183 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 NFKBIL1Q9UBC1 381 aaPredicted RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 TBC1D29Q9UFV1 150 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 KLHL3Q9UH77 587 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 LIMA1Q9UHB6 759 aaKnown RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 CROTQ9UKG9 612 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 TLK1Q9UKI8 766 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 RARRES3Q9UL19 164 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 OAS3Q9Y6K5 1087 aaKnown RBP6.21□□□□□ -1.42
CUX1-220ENST00000607092 CCDC168Q8NDH2 2452 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 ITPR3Q14573 2671 aa6.21□□□□□ -1.42
CUX1-220ENST00000607092 POLEQ07864 2286 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 TRBV23OR9-2A0A075B6M9 112 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 C1orf232A0A0U1RR37 186 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 SSU72P8A0A1W2PR75 194 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 LRRC10BA6NIK2 292 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 PDZK1P1A8MUH7 402 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 MATN3O15232 486 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 SPAG6O75602 509 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 KIAA0754O94854 1291 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 SLC25A14O95258 325 aaPredicted RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 PEX11BO96011 259 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 SOD1P00441 154 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 KLK3P07288 261 aaPredicted RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 CD63P08962 238 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 PYGMP11217 842 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 CTPS1P17812 591 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 NELFEP18615 380 aaKnown RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms