RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TMPRSS3P57727 454 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 BCL2L1Q07817 233 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 SGCGQ13326 291 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 MYLK3Q32MK0 819 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 CES3Q6UWW8 571 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 UNC5AQ6ZN44 842 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 PARS2Q7L3T8 475 aaKnown RBP12.62□□□□□ -0.39
UPF1-208ENST00000600012 DENND6BQ8NEG7 585 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 IFI44Q8TCB0 444 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 MAPK15Q8TD08 544 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 RAB7BQ96AH8 199 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 VOPP1Q96AW1 172 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 ZNF669Q96BR6 464 aaPredicted RBP12.62□□□□□ -0.39
UPF1-208ENST00000600012 IL22Q9GZX6 179 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 ATP13A3Q9H7F0 1226 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 CAAP1Q9H8G2 361 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 KIF26BQ2KJY2 2108 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 LRRK1Q38SD2 2015 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 CAPN8A6NHC0 703 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 ERVH48-1M5A8F1 160 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 RAD51BO15315 384 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 AQP9O43315 295 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 TSPAN6O43657 245 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 FZD6O60353 706 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 SOCS5O75159 536 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 PGLSO95336 258 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 ABHD2P08910 425 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 MYF5P13349 255 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 PGAM1P18669 254 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 CA4P22748 312 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 SERPINA4P29622 427 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 PHBP35232 272 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 QPCTQ16769 361 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 ISXQ2M1V0 245 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 ARMC12Q5T9G4 340 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 IGF2-ASQ6U949 168 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 PLPP6Q8IY26 295 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 IQCKQ8N0W5 287 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 ZNF843Q8N446 348 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 PAF1Q8N7H5 531 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 PPHLN1Q8NEY8 458 aaKnown RBP12.61□□□□□ -0.39
UPF1-208ENST00000600012 BLOC1S5Q8TDH9 187 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 KCNE4Q8WWG9 221 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 ASB12Q8WXK4 309 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 GRAMD1AQ96CP6 724 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 NAF1Q96HR8 494 aaKnown RBP12.61□□□□□ -0.39
UPF1-208ENST00000600012 LENG8Q96PV6 779 aaPredicted RBP12.61□□□□□ -0.39
UPF1-208ENST00000600012 KLF6Q99612 283 aaPredicted RBP12.61□□□□□ -0.39
UPF1-208ENST00000600012 C1QTNF2Q9BXJ5 285 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 VIPAS39Q9H9C1 493 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 THSD1Q9NS62 852 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 SAMD15Q9P1V8 674 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 SOX13Q9UN79 622 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 TCAF1Q9Y4C2 921 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 SPO11Q9Y5K1 396 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 NFS1Q9Y697 457 aa12.61□□□□□ -0.39
UPF1-208ENST00000600012 ZNF462Q96JM2 2506 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 A0A087WUV0 522 aaPredicted RBP12.6□□□□□ -0.39
UPF1-208ENST00000600012 CPED1A4D0V7 1026 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 SMIM23A6NLE4 172 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 NEMP1O14524 444 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 TRAFD1O14545 582 aaPredicted RBP12.6□□□□□ -0.39
UPF1-208ENST00000600012 TPP1O14773 563 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 ATP8B1O43520 1251 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 KALRNO60229 2985 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 POP4O95707 220 aaKnown RBP12.6□□□□□ -0.39
UPF1-208ENST00000600012 EPOP01588 193 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 UGT2B4P06133 528 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 NUDT17P0C025 328 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 PLA2G2AP14555 144 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 TSHRP16473 764 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 JUNDP17535 347 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 CTPS1P17812 591 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 NMBRP28336 390 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 RHDQ02161 417 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 CFHR1Q03591 330 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 RAD51Q06609 339 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 IFFO1Q0D2I5 559 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 MSLNQ13421 630 aaPredicted RBP12.6□□□□□ -0.39
UPF1-208ENST00000600012 PDE1CQ14123 709 aaPredicted RBP12.6□□□□□ -0.39
UPF1-208ENST00000600012 CRYMQ14894 314 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 EFTUD2Q15029 972 aaKnown RBP eCLIP12.6□□□□□ -0.393e-6■■■□□ 18.5
UPF1-208ENST00000600012 PTPRRQ15256 657 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 CDKN3Q16667 212 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 TAF1BQ53T94 588 aaPredicted RBP12.6□□□□□ -0.39
UPF1-208ENST00000600012 PCID2Q5JVF3 399 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 ALS2CLQ60I27 953 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 STEAP4Q687X5 459 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 C3orf62Q6ZUJ4 267 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 MICALCLQ6ZW33 695 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 ZNF605Q86T29 641 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 ZSWIM9Q86XI8 627 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 GSDMBQ8TAX9 411 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 FBF1Q8TES7 1133 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 BTN2A2Q8WVV5 523 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 WBP1Q96G27 269 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 ZNF778Q96MU6 729 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 TUBGCP5Q96RT8 1024 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 RUFY1Q96T51 708 aa12.6□□□□□ -0.39
UPF1-208ENST00000600012 DPH1Q9BZG8 443 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms