RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 COILP38432 576 aaPredicted RBP19.09■□□□□ 0.65
SS18-208ENST00000577751 LMAN1P49257 510 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 CLCNKAP51800 687 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 CLDN6P56747 220 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 POU6F1Q14863 301 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 LDLRAP1Q5SW96 308 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 CDCP2Q5VXM1 449 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 NAGSQ8N159 534 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 DNAAF3Q8N9W5 541 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 DDHD1Q8NEL9 900 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 ZDHHC1Q8WTX9 485 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 STYXQ8WUJ0 223 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 GATA6Q92908 595 aa19.09■□□□□ 0.65
SS18-208ENST00000577751 NLE1Q9NVX2 485 aaPredicted RBP19.09■□□□□ 0.65
SS18-208ENST00000577751 BPTFQ12830 3046 aa19.08■□□□□ 0.65
SS18-208ENST00000577751 PNLIPP16233 465 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 NFATC2Q13469 925 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 CAMK2BQ13554 666 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 CERCAMQ5T4B2 595 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 GPRC6AQ5T6X5 926 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 LRRTM4Q86VH4 590 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 MARCH9Q86YJ5 346 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 ZNF547Q8IVP9 402 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 MAPK15Q8TD08 544 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 CDKN2AIPNLQ96HQ2 116 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 DNAJC1Q96KC8 554 aaKnown RBP19.08■□□□□ 0.64
SS18-208ENST00000577751 ASB8Q9H765 288 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 RABGEF1Q9UJ41 708 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 NEU2Q9Y3R4 380 aa19.08■□□□□ 0.64
SS18-208ENST00000577751 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.07■□□□□ 0.64
SS18-208ENST00000577751 FAM149AA5PLN7 773 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 PRR19A6NJB7 356 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 KMOO15229 486 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 FANCGO15287 622 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 NUDT21O43809 227 aaKnown RBP19.07■□□□□ 0.64
SS18-208ENST00000577751 PHF2O75151 1096 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 ECEL1O95672 775 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 ACP5P13686 325 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 JUPP14923 745 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 BASP1P80723 227 aaKnown RBP19.07■□□□□ 0.64
SS18-208ENST00000577751 TMPRSS15P98073 1019 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 CCDC137Q6PK04 289 aaKnown RBP19.07■□□□□ 0.64
SS18-208ENST00000577751 PPP1R21Q6ZMI0 780 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 C11orf96Q7Z7L8 435 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 DCBLD1Q8N8Z6 715 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 RASGEF1AQ8N9B8 481 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 GDAP1Q8TB36 358 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 CCDC74AQ96AQ1 378 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 RANBP9Q96S59 729 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 NAPGQ99747 312 aaPredicted RBP19.07■□□□□ 0.64
SS18-208ENST00000577751 CCDC3Q9BQI4 270 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 ABCG4Q9H172 646 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 SLC23A2Q9UGH3 650 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 CLCA2Q9UQC9 943 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 KCNK6Q9Y257 313 aa19.07■□□□□ 0.64
SS18-208ENST00000577751 KNTC1P50748 2209 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 A6NCN8 305 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 CCL22O00626 93 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 EML2O95834 649 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 GAS8O95995 478 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 MT-CO3P00414 261 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 KRT14P02533 472 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 ZNF7P17097 686 aaPredicted RBP19.06■□□□□ 0.64
SS18-208ENST00000577751 MAGEA6P43360 314 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 FNTAP49354 379 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 CDK16Q00536 496 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 TARDBPQ13148 414 aaKnown RBP eCLIP19.06■□□□□ 0.642e-8■■□□□ 13.7
SS18-208ENST00000577751 SEPT6Q14141 434 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 KCTD19Q17RG1 926 aaPredicted RBP19.06■□□□□ 0.64
SS18-208ENST00000577751 SNX20Q7Z614 316 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 ARL14Q8N4G2 192 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 WDR48Q8TAF3 677 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 PATE1Q8WXA2 126 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 TTC25Q96NG3 672 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 TIMM29Q9BSF4 260 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 ZCCHC2Q9C0B9 1178 aaKnown RBP19.06■□□□□ 0.64
SS18-208ENST00000577751 LRIT1Q9P2V4 623 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 TBC1D29Q9UFV1 150 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 RIMKLBQ9ULI2 386 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 RNF215Q9Y6U7 377 aa19.06■□□□□ 0.64
SS18-208ENST00000577751 TRBV5-4A0A0C4DH59 114 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 HEATR9A2RTY3 570 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 NTN3O00634 580 aaPredicted RBP19.05■□□□□ 0.64
SS18-208ENST00000577751 CASC3O15234 703 aaKnown RBP19.05■□□□□ 0.64
SS18-208ENST00000577751 TPSB2P20231 275 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 ADRA1DP25100 572 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 MC4RP32245 332 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 MAZP56270 477 aaKnown RBP19.05■□□□□ 0.64
SS18-208ENST00000577751 LAMB3Q13751 1172 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 GTF2H3Q13889 308 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 NR1D2Q14995 579 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 TPSAB1Q15661 275 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 GPR33Q49SQ1 333 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 CCDC38Q502W7 563 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 CRTC3Q6UUV7 619 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 ZNF438Q7Z4V0 828 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 CREG2Q8IUH2 290 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 ULK4Q96C45 1275 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 KLC4Q9NSK0 619 aa19.05■□□□□ 0.64
SS18-208ENST00000577751 SAR1BQ9Y6B6 198 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms