RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 UBXN8O00124 270 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 AP3B1O00203 1094 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 OGTO15294 1046 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 RASSF9O75901 435 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 B3GAT3O94766 335 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 PIGRP01833 764 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 ANXA6P08133 673 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 SPARCP09486 303 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 HOXB8P17481 243 aaPredicted RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 KRT4P19013 534 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 PROZP22891 400 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 PTAFRP25105 342 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 DNAJB1P25685 340 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 KLRC2P26717 231 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 NMT1P30419 496 aaKnown RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 RPL9P32969 192 aaKnown RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 PBX3P40426 434 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 MTHFRP42898 656 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 SYKP43405 635 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 IFNAR2P48551 515 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 PIK3CGP48736 1102 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 SULT1E1P49888 294 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 ARFIP1P53367 373 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 SNRPFP62306 86 aaKnown RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 ASIC1P78348 528 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 SCN1BQ07699 218 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 HYAL1Q12794 435 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 CTBP1Q13363 440 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 DUSP6Q16828 381 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 BMT2Q1RMZ1 405 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 BTBD16Q32M84 506 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 HSP90AA5PQ58FG0 334 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 ZNF628Q5EBL2 1059 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 DCAF17Q5H9S7 520 aaPredicted RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 LIPMQ5VYY2 423 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 ANKS6Q68DC2 871 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 CES5AQ6NT32 575 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 ZNF529Q6P280 563 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 TMEM154Q6P9G4 183 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 SHC4Q6S5L8 630 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 FIP1L1Q6UN15 594 aaKnown RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 SFR1Q86XK3 245 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 TUSC5Q8IXB3 177 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 KIF18AQ8NI77 898 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 POMGNT1Q8WZA1 660 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 NCSTNQ92542 709 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 TFAP2CQ92754 450 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 SPSB4Q96A44 273 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 DNAJC19Q96DA6 116 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 PDLIM5Q96HC4 596 aaKnown RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 ZBTB45Q96K62 511 aaPredicted RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 CCDC114Q96M63 670 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 MYOCQ99972 504 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 RMI1Q9H9A7 625 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 MIOSQ9NXC5 875 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 ZDHHC7Q9NXF8 308 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 DDX43Q9NXZ2 648 aaKnown RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 AIPL1Q9NZN9 384 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 TBC1D7Q9P0N9 293 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 LIMA1Q9UHB6 759 aaKnown RBP6.18□□□□□ -1.42
VPS53-212ENST00000572259 IL19Q9UHD0 177 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 CD207Q9UJ71 328 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 ADAM28Q9UKQ2 775 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 CAPN11Q9UMQ6 739 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 C2CD2Q9Y426 696 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 SF3B1O75533 1304 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS53-212ENST00000572259 PDCD11Q14690 1871 aaKnown RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 REV3LO60673 3130 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ATG2AQ2TAZ0 1938 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 SMIM28A0A1B0GU29 152 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 A0A1B0GVL5 298 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 TCRBV7S2A1N4TA0A589 114 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 LRRD1A4D1F6 860 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 A4D1N5 150 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 FAM90A18PA6NE21 464 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 FAM90A16PA6NEW6 464 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 CASTOR2A6NHX0 329 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 FAM90A9PA6NNJ1 464 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 FAM90A5PA8MXJ8 464 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 MYO1GB0I1T2 1018 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 H0YC42 278 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 F2RL2O00254 374 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 PER2O15055 1255 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 EIF3DO15371 548 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS53-212ENST00000572259 BCAT2O15382 392 aaPredicted RBP6.17□□□□□ -1.42
VPS53-212ENST00000572259 SMPD2O60906 423 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 TULP3O75386 442 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 FTCDO95954 541 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 C1RP00736 705 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ITGB3P05106 788 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 CD1AP06126 327 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 FAM90A15PP0C7V4 464 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 FAM90A14PP0C7W9 464 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 KCNE1P15382 129 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 COMTP21964 271 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 MST1P26927 711 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 ACVR2AP27037 513 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 SLC5A2P31639 672 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 GLUD2P49448 558 aa6.17□□□□□ -1.42
VPS53-212ENST00000572259 MXI1P50539 228 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms