RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 EPS8Q12929 822 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 NFATC3Q12968 1075 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 CCL15Q16663 113 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 ZIK1Q3SY52 487 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-207ENST00000572253 PIK3R6Q5UE93 754 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 NANOGP8Q6NSW7 305 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 THAP5Q7Z6K1 395 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 STK32CQ86UX6 486 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 C8orf59Q8N0T1 100 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-207ENST00000572253 AADATQ8N5Z0 425 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 FNDC5Q8NAU1 212 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 ZNF555Q8NEP9 628 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 BRSK1Q8TDC3 778 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 NANOGQ9H9S0 305 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 VPS9D1Q9Y2B5 631 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 SLC45A1Q9Y2W3 748 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 BRCA1P38398 1863 aaKnown RBP10.68□□□□□ -0.7
CCDC40-207ENST00000572253 LOC285095A0A1B0GVY8 99 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 LCHNA4D1U4 455 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 STX16O14662 325 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 ECI2O75521 394 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 ANXA6P08133 673 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 HAPLN1P10915 354 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-207ENST00000572253 MRPL19P49406 292 aaKnown RBP10.68□□□□□ -0.7
CCDC40-207ENST00000572253 ALDH3A2P51648 485 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 OCA2Q04671 838 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 EMX2Q04743 252 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 IL10RBQ08334 325 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 NR1D2Q14995 579 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 POLD3Q15054 466 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-207ENST00000572253 PAGE3Q5JUK9 113 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 USP51Q70EK9 711 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 SCD5Q86SK9 330 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 NPLOC4Q8TAT6 608 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 HASPINQ8TF76 798 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 TMEM74Q96NL1 305 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 SOX17Q9H6I2 414 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-207ENST00000572253 FAM50BQ9Y247 325 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 SNX5Q9Y5X3 404 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 ARL5AQ9Y689 179 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 SLC30A1Q9Y6M5 507 aa10.68□□□□□ -0.7
CCDC40-207ENST00000572253 BTN3A1O00481 513 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 CPNE6O95741 557 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 C1RP00736 705 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 MMP2P08253 660 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ATXN1LP0C7T5 689 aaKnown RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 MBL2P11226 248 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 NFKBIAP25963 317 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 FMO4P31512 558 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 PBX3P40426 434 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 AFF1P51825 1210 aaKnown RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ARSFP54793 590 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ACVR1Q04771 509 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 RGS21Q2M5E4 152 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ANKDD1AQ495B1 522 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 HABP4Q5JVS0 413 aaKnown RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 RBM48Q5RL73 367 aaKnown RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 TMEM214Q6NUQ4 689 aaKnown RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 FAM117BQ6P1L5 589 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 PAQR3Q6TCH7 311 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 GPRIN3Q6ZVF9 776 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 MON1AQ86VX9 555 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ZDHHC13Q8IUH4 622 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 OR13F1Q8NGS4 319 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 PAAF1Q9BRP4 392 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 COMMD10Q9Y6G5 202 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 PLXNB2O15031 1838 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 IQCA1LA6NCM1 817 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 GRXCR2A6NFK2 248 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 NCF1BA6NI72 391 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 NCF1CA8MVU1 366 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 VPS26AO75436 327 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 POMCP01189 267 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 SERPINF2P08697 491 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 RPS17P08708 135 aaKnown RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 TFPTP0C1Z6 253 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 RAP2AP10114 183 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 NCF1P14598 390 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 PORP16435 677 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 JUNBP17275 347 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 MAPK10P53779 464 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ECT2LQ008S8 904 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 TSNQ15631 228 aaKnown RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ANKRD26P1Q6NSI1 321 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 OR13C4Q8NGS5 318 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 MUS81Q96NY9 551 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 UGT2B28Q9BY64 529 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 BRINP2Q9C0B6 783 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 RAD21L1Q9H4I0 556 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 CD274Q9NZQ7 290 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 PSME2Q9UL46 239 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 RIMKLBQ9ULI2 386 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 PCDHB3Q9Y5E6 796 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 GNGT2O14610 69 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ABCB7O75027 752 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 EPOP01588 193 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ZNF182P17025 639 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-207ENST00000572253 APLP1P51693 650 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 ATP1A4Q13733 1029 aa10.67□□□□□ -0.7
CCDC40-207ENST00000572253 PARP15Q460N3 678 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms