RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 HPF1Q9NWY4 346 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 ADA2Q9NZK5 511 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 AFF4Q9UHB7 1163 aaKnown RBP10.77□□□□□ -0.68
CLK3-226ENST00000569406 TPST1O60507 370 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 LYPLA1O75608 230 aaPredicted RBP10.77□□□□□ -0.69
CLK3-226ENST00000569406 TIPRLO75663 272 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 KRT1P04264 644 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 FABP1P07148 127 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 CD19P15391 556 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 PROZP22891 400 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 DGKQP52824 942 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 MERTKQ12866 999 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 GRIK2Q13002 908 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 LIN9Q5TKA1 542 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 OR52H1Q8NGJ2 320 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 RHOXF1Q8NHV9 184 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 NDNFQ8TB73 568 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 GANCQ8TET4 914 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 C20orf27Q9GZN8 174 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 C8orf33Q9H7E9 229 aaPredicted RBP10.77□□□□□ -0.69
CLK3-226ENST00000569406 EFCAB1Q9HAE3 211 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 SSU72Q9NP77 194 aaKnown RBP10.77□□□□□ -0.69
CLK3-226ENST00000569406 TAS2R9Q9NYW1 312 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 PNMA8BQ9ULN7 279 aaPredicted RBP10.77□□□□□ -0.69
CLK3-226ENST00000569406 NTRK1P04629 796 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 CSNK2BP67870 215 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 CUL2Q13617 745 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 DSG2Q14126 1118 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 STXBP2Q15833 593 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 PYHIN1Q6K0P9 492 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 LACC1Q8IV20 430 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 TBC1D21Q8IYX1 336 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 OR4M1Q8NGD0 313 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 MARVELD3Q96A59 401 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 SERAC1Q96JX3 654 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 TSGA13Q96PP4 275 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 NUFIP1Q9UHK0 495 aaKnown RBP10.77□□□□□ -0.69
CLK3-226ENST00000569406 STOML2Q9UJZ1 356 aa10.77□□□□□ -0.69
CLK3-226ENST00000569406 DNAJC25-GNG10A0A024R161 153 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 OR2B3O76000 313 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 SEC14L2O76054 403 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 GOT2P00505 430 aaKnown RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 GJB1P08034 283 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 MBL2P11226 248 aaPredicted RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 HPGDP15428 266 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 ETV4P43268 484 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CCR10P46092 362 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 OGDHQ02218 1023 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CEACAM7Q14002 265 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CA9Q16790 459 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CCDC142Q17RM4 750 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CCNJQ5T5M9 372 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CHSY3Q70JA7 882 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 UBQLNLQ8IYU4 475 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 ZCCHC9Q8N567 271 aaKnown RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 CHST13Q8NET6 341 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 FAR1Q8WVX9 515 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 SORBS1Q9BX66 1292 aaKnown RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 CCDC90BQ9GZT6 254 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 XYLT2Q9H1B5 865 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 SLC6A15Q9H2J7 730 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 TMEM134Q9H6X4 195 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 BTBD3Q9Y2F9 522 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 PLXNA1Q9UIW2 1896 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 GNB5O14775 395 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CAPN5O15484 640 aaPredicted RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 HOXA2O43364 376 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 EEF1A1P68104 462 aaKnown RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 EEF1A2Q05639 463 aaKnown RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 KCNJ11Q14654 390 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 EEF1A1P5Q5VTE0 462 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 BSPRYQ5W0U4 402 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 C16orf89Q6UX73 402 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 ENOSF1Q7L5Y1 443 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 GPC2Q8N158 579 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 KYQ8NBH2 561 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 WDR48Q8TAF3 677 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 FOXJ1Q92949 421 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 SGTBQ96EQ0 304 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 MOGAT1Q96PD6 335 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 C6orf62Q9GZU0 229 aaPredicted RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 ING2Q9H160 280 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 DSN1Q9H410 356 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CYP4F12Q9HCS2 524 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 RBAKQ9NYW8 714 aaPredicted RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 SIRPGQ9P1W8 387 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 MFHAS1Q9Y4C4 1052 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 NRCAMQ92823 1304 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 A0A0G2JLL6 359 aaPredicted RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 NRP1O14786 923 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 ABCB7O75027 752 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 ZSCAN5DPP0CG00 497 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 RAB3AP20336 220 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 MYF6P23409 242 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 ARSEP51690 589 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 RPL7AP62424 266 aaKnown RBP10.76□□□□□ -0.69
CLK3-226ENST00000569406 ANKRD39Q53RE8 183 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 TXNRD3NBQ6F5E7 133 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 CDHR3Q6ZTQ4 885 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 PRRT2Q7Z6L0 340 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms