RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 NOCTQ9UK39 431 aaKnown RBP15.94■□□□□ 0.14
CLK3-223ENST00000568488 SNX7Q9UNH6 387 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 AP4E1Q9UPM8 1137 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 CELSR1Q9NYQ6 3014 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 PRSS44E7EML9 344 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 F8VZ95 297 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 PRKCSHP14314 528 aaPredicted RBP15.93■□□□□ 0.14
CLK3-223ENST00000568488 UCHL3P15374 230 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 XRCC1P18887 633 aaPredicted RBP15.93■□□□□ 0.14
CLK3-223ENST00000568488 SLC19A1P41440 591 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 NSFP46459 744 aaKnown RBP15.93■□□□□ 0.14
CLK3-223ENST00000568488 PER3P56645 1201 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 LAMB3Q13751 1172 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 CA9Q16790 459 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 VWA3BQ502W6 1294 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 PGBD5Q8N414 524 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 ARFGAP1Q8N6T3 406 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 NPWQ8N729 165 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 PIH1D2Q8WWB5 315 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 ZNF599Q96NL3 588 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 MCEEQ96PE7 176 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 FCRL4Q96PJ5 515 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 MLPHQ9BV36 600 aaPredicted RBP15.93■□□□□ 0.14
CLK3-223ENST00000568488 NAA15Q9BXJ9 866 aaKnown RBP15.93■□□□□ 0.14
CLK3-223ENST00000568488 ILKAPQ9H0C8 392 aaPredicted RBP15.93■□□□□ 0.14
CLK3-223ENST00000568488 ZNF624Q9P2J8 865 aaPredicted RBP15.93■□□□□ 0.14
CLK3-223ENST00000568488 B3GNT3Q9Y2A9 372 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 SIK3Q9Y2K2 1263 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 CROCCQ5TZA2 2017 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 PDZD2O15018 2839 aa15.93■□□□□ 0.14
CLK3-223ENST00000568488 PDHA1P08559 390 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 HSPA9P38646 679 aaKnown RBP15.92■□□□□ 0.14
CLK3-223ENST00000568488 CAPZBP47756 277 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 GLRBP48167 497 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 ARL4DP49703 201 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 RPL7AP62424 266 aaKnown RBP15.92■□□□□ 0.14
CLK3-223ENST00000568488 ZRSR2Q15696 482 aaKnown RBP15.92■□□□□ 0.14
CLK3-223ENST00000568488 SEPT7Q16181 437 aaKnown RBP15.92■□□□□ 0.14
CLK3-223ENST00000568488 FAM69BQ5VUD6 431 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 DNAJC24Q6P3W2 148 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 RFX8Q6ZV50 586 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 BBS5Q8N3I7 341 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 TTC30BQ8N4P2 665 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 C3orf20Q8ND61 904 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 ADAMTS17Q8TE56 1095 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 SMAD5Q99717 465 aaKnown RBP15.92■□□□□ 0.14
CLK3-223ENST00000568488 CNPY3Q9BT09 278 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 CHST8Q9H2A9 424 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 ARFGAP3Q9NP61 516 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 WASH6PQ9NQA3 447 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 CNOT6Q9ULM6 557 aaKnown RBP15.92■□□□□ 0.14
CLK3-223ENST00000568488 PPIL1Q9Y3C6 166 aa15.92■□□□□ 0.14
CLK3-223ENST00000568488 IGHV5-51A0A0C4DH38 117 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 PDZK1P1A8MUH7 402 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 NUAK1O60285 661 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 CPNE3O75131 537 aaKnown RBP15.91■□□□□ 0.14
CLK3-223ENST00000568488 CALB1P05937 261 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 EBLN1P0CF75 366 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 UNGP13051 313 aaPredicted RBP15.91■□□□□ 0.14
CLK3-223ENST00000568488 ZNF30P17039 623 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 DESP17661 470 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 VAV2P52735 878 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 STC1P52823 247 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 EPHB1P54762 984 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 ACY1Q03154 408 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 PPP6R3Q5H9R7 873 aaPredicted RBP15.91■□□□□ 0.14
CLK3-223ENST00000568488 HGSNATQ68CP4 663 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 TRIM72Q6ZMU5 477 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 MED25Q71SY5 747 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 BPHLQ86WA6 291 aaPredicted RBP15.91■□□□□ 0.14
CLK3-223ENST00000568488 TMEM126BQ8IUX1 230 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 ENDOVQ8N8Q3 282 aaKnown RBP15.91■□□□□ 0.14
CLK3-223ENST00000568488 TMEM102Q8N9M5 508 aaPredicted RBP15.91■□□□□ 0.14
CLK3-223ENST00000568488 KCTD15Q96SI1 283 aaPredicted RBP15.91■□□□□ 0.14
CLK3-223ENST00000568488 PCDHB18PQ96TA0 734 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 FGF21Q9NSA1 209 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 PCSK1NQ9UHG2 260 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 OSGIN2Q9Y236 505 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 CSMD2Q7Z408 3487 aa15.91■□□□□ 0.14
CLK3-223ENST00000568488 ZG16O60844 167 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 SCRG1O75711 98 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 CLDN7O95471 211 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 KLK3P07288 261 aaPredicted RBP15.9■□□□□ 0.14
CLK3-223ENST00000568488 RRADP55042 308 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 GSCP56915 257 aaPredicted RBP15.9■□□□□ 0.14
CLK3-223ENST00000568488 PPP1CAP62136 330 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 ITKQ08881 620 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 GPS2Q13227 327 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 INSCQ1MX18 579 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 PLA2G4EQ3MJ16 856 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 TDRD12Q587J7 1177 aaKnown RBP15.9■□□□□ 0.14
CLK3-223ENST00000568488 HSP90AA4PQ58FG1 418 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 ZNF648Q5T619 568 aaPredicted RBP15.9■□□□□ 0.14
CLK3-223ENST00000568488 LYPLAL1Q5VWZ2 237 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 IZUMO3Q5VZ72 239 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 DCUN1D2Q6PH85 259 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 CERS6Q6ZMG9 384 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 AOPEPQ8N6M6 819 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 GLIS1Q8NBF1 620 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 NSMCE1Q8WV22 266 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms