RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 USP12O75317 370 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 ECEL1O95672 775 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 AP2A1O95782 977 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 FGGP02679 453 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 RPLP0P05388 317 aaKnown RBP13.23□□□□□ -0.29
CLK3-213ENST00000563842 ACP5P13686 325 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 LMAN1P49257 510 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 CCL7P80098 99 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 CYP4F3Q08477 520 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 TMEM115Q12893 351 aaPredicted RBP13.23□□□□□ -0.29
CLK3-213ENST00000563842 SNX1Q13596 522 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 LAMB3Q13751 1172 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 CHRNA6Q15825 494 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 CLPPQ16740 277 aaPredicted RBP13.23□□□□□ -0.29
CLK3-213ENST00000563842 LONRF2Q1L5Z9 754 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 INSCQ1MX18 579 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 DENND5AQ6IQ26 1287 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 FAM151BQ6UXP7 276 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 PROSER1Q86XN7 944 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 NAGSQ8N159 534 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 ARL14Q8N4G2 192 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 ZNF398Q8TD17 642 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 PBKQ96KB5 322 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 TMEM74Q96NL1 305 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 NAP1L3Q99457 506 aaPredicted RBP13.23□□□□□ -0.29
CLK3-213ENST00000563842 TIMM29Q9BSF4 260 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 ARFGAP3Q9NP61 516 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 SMOXQ9NWM0 555 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 PLEKHM1Q9Y4G2 1056 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 RNF215Q9Y6U7 377 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 FLNBO75369 2602 aaKnown RBP13.23□□□□□ -0.29
CLK3-213ENST00000563842 FRYQ5TBA9 3013 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 KIR2DS5A0A0G2JLQ3 304 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 A0A0G2JNG1 304 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 KIR2DS3K7RE56 304 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 BUD23O43709 281 aaKnown RBP13.22□□□□□ -0.29
CLK3-213ENST00000563842 CAPNS1P04632 268 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 ZNF7P17097 686 aaPredicted RBP13.22□□□□□ -0.29
CLK3-213ENST00000563842 FASLGP48023 281 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 MAZP56270 477 aaKnown RBP13.22□□□□□ -0.29
CLK3-213ENST00000563842 SPARCL1Q14515 664 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 KIR2DS5Q14953 304 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 NR1D2Q14995 579 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 GSTA5Q7RTV2 222 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 ZNF438Q7Z4V0 828 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 SPRED1Q7Z699 444 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 SLC9B2Q86UD5 537 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 Q8N9G6 341 aaPredicted RBP13.22□□□□□ -0.29
CLK3-213ENST00000563842 DDHD1Q8NEL9 900 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 MDM1Q8TC05 714 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 HEXDCQ8WVB3 486 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 SH3KBP1Q96B97 665 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 ULK4Q96C45 1275 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 ZNF514Q96K75 400 aaPredicted RBP13.22□□□□□ -0.29
CLK3-213ENST00000563842 STRADBQ9C0K7 418 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 ASB8Q9H765 288 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 RALYQ9UKM9 306 aaKnown RBP13.22□□□□□ -0.29
CLK3-213ENST00000563842 KCNK6Q9Y257 313 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 PRKAB1Q9Y478 270 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 ST14Q9Y5Y6 855 aa13.22□□□□□ -0.29
CLK3-213ENST00000563842 DNMT3AQ9Y6K1 912 aaPredicted RBP13.22□□□□□ -0.29
CLK3-213ENST00000563842 KLHL33A6NCF5 533 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 D6RAR5 112 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 KIF5CO60282 957 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 UGT1A9O60656 530 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 MTX2O75431 263 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 SRP72O76094 671 aaKnown RBP13.21□□□□□ -0.29
CLK3-213ENST00000563842 PRAMEF1O95521 474 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 RALBP11234 206 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 F3P13726 295 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 UGT1A6P19224 532 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 MSH3P20585 1137 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 ITGALP20701 1170 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 UGT1A1P22309 533 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 UGT1A4P22310 534 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 AKT1P31749 480 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 CXCR5P32302 372 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 UGT1A3P35503 534 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 UGT1A5P35504 534 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 LSSP48449 732 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 CDH17Q12864 832 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 MSLNQ13421 630 aaPredicted RBP13.21□□□□□ -0.29
CLK3-213ENST00000563842 OLIG2Q13516 323 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 SIX1Q15475 284 aaPredicted RBP13.21□□□□□ -0.29
CLK3-213ENST00000563842 ZNF648Q5T619 568 aaPredicted RBP13.21□□□□□ -0.29
CLK3-213ENST00000563842 IYDQ6PHW0 289 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 CRTC3Q6UUV7 619 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 PPP1R21Q6ZMI0 780 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 PIM3Q86V86 326 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 TRAPPC5Q8IUR0 188 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 REXO1L1PQ8IX06 675 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 SFRP1Q8N474 314 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 DNAAF3Q8N9W5 541 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 STYXQ8WUJ0 223 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 DPYSL5Q9BPU6 564 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.21□□□□□ -0.29
CLK3-213ENST00000563842 OSGEPL1Q9H4B0 414 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 POLR1BQ9H9Y6 1135 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 UGT1A7Q9HAW7 530 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 UGT1A10Q9HAW8 530 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 607.5 ms