RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PHPT1Q9NRX4 125 aaPredicted RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 GPR27Q9NS67 375 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 INTS10Q9NVR2 710 aaKnown RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 PLAAQ9Y263 795 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 NFS1Q9Y697 457 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 ATXN2Q99700 1313 aaKnown RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 BPTFQ12830 3046 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 A0A1W2PR77 199 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 POC1B-GALNT4F8VUJ3 575 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 NDUFS3O75489 264 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 HAUS5O94927 633 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 AHSGP02765 367 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 AKT1P31749 480 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 GP5P40197 560 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 PDE1CQ14123 709 aaPredicted RBP16.41■□□□□ 0.22
VPS4A-202ENST00000562754 SIM2Q14190 667 aaPredicted RBP16.41■□□□□ 0.22
VPS4A-202ENST00000562754 CASP8Q14790 479 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 WDR45BQ5MNZ6 344 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 LDLRAP1Q5SW96 308 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 RNF187Q5TA31 235 aaPredicted RBP16.41■□□□□ 0.22
VPS4A-202ENST00000562754 KCTD16Q68DU8 428 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 DOK6Q6PKX4 331 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 LAYNQ6UX15 382 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 ADGRG6Q86SQ4 1221 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 RBFAQ8N0V3 343 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 IQCKQ8N0W5 287 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 PRSS33Q8NF86 280 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 GABPB2Q8TAK5 448 aaPredicted RBP16.41■□□□□ 0.22
VPS4A-202ENST00000562754 DCAKDQ8WVC6 231 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 CPNE1Q99829 537 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 P2RY12Q9H244 342 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 AASDHPPTQ9NRN7 309 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 NSMCE4AQ9NXX6 385 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 TMEM98Q9Y2Y6 226 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 PRSS21Q9Y6M0 314 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 R4GN57 208 aa16.41■□□□□ 0.22
VPS4A-202ENST00000562754 UBA6A0AVT1 1052 aaPredicted RBP16.4■□□□□ 0.22
VPS4A-202ENST00000562754 CACNB4O00305 520 aaPredicted RBP16.4■□□□□ 0.22
VPS4A-202ENST00000562754 SGTAO43765 313 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 HOXC4P09017 264 aaPredicted RBP16.4■□□□□ 0.22
VPS4A-202ENST00000562754 CD151P48509 253 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 CSE1LP55060 971 aaKnown RBP16.4■□□□□ 0.22
VPS4A-202ENST00000562754 RACK1P63244 317 aaKnown RBP16.4■□□□□ 0.22
VPS4A-202ENST00000562754 NFATC4Q14934 902 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 CTSL3PQ5NE16 218 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 ZNF549Q6P9A3 640 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 Q6ZSR6 202 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 ZC3HC1Q86WB0 502 aaKnown RBP16.4■□□□□ 0.22
VPS4A-202ENST00000562754 RGL4Q8IZJ4 473 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 SLC22A18ASQ8N1D0 253 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 EPS8L3Q8TE67 593 aaKnown RBP16.4■□□□□ 0.22
VPS4A-202ENST00000562754 ZIM3Q96PE6 472 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 RBBP8Q99708 897 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 OR2AG1Q9H205 316 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 ATXN10Q9UBB4 475 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 FETUBQ9UGM5 382 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 CRYL1Q9Y2S2 319 aa16.4■□□□□ 0.22
VPS4A-202ENST00000562754 TMEM202A6NGA9 273 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 TOR1BO14657 336 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 PRMT5O14744 637 aaPredicted RBP16.39■□□□□ 0.21
VPS4A-202ENST00000562754 TCEA3O75764 348 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 RHOBTB1O94844 696 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 MSH3P20585 1137 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 RPS3P23396 243 aaKnown RBP eCLIP16.39■□□□□ 0.21
VPS4A-202ENST00000562754 PPARGP37231 505 aaPredicted RBP16.39■□□□□ 0.21
VPS4A-202ENST00000562754 RABIFP47224 123 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 POLD2P49005 469 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 CTSCP53634 463 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 EIF3BP55884 814 aaKnown RBP16.39■□□□□ 0.21
VPS4A-202ENST00000562754 YPEL5P62699 121 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 ZNF844Q08AG5 666 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 TCF15Q12870 199 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 RBM20Q5T481 1227 aaKnown RBP16.39■□□□□ 0.21
VPS4A-202ENST00000562754 PRR23BQ6ZRT6 265 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 DET1Q7L5Y6 550 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 CLDN19Q8N6F1 224 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 RASGEF1AQ8N9B8 481 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 MFSD2AQ8NA29 543 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 ACVR1CQ8NER5 493 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 ATXN7L3BQ96GX2 97 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 VPS39Q96JC1 886 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 BIRC8Q96P09 236 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 TTC1Q99614 292 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 RHOJQ9H4E5 214 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 TRIM39Q9HCM9 518 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 FGF22Q9HCT0 170 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 EURLQ9NYK6 297 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 CTNNAL1Q9UBT7 734 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 VPS9D1Q9Y2B5 631 aa16.39■□□□□ 0.21
VPS4A-202ENST00000562754 PCYT1BQ9Y5K3 369 aaPredicted RBP16.39■□□□□ 0.21
VPS4A-202ENST00000562754 HMX2A2RU54 273 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 SMIM23A6NLE4 172 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 CFAP99D6REC4 459 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 BCAT2O15382 392 aaPredicted RBP16.38■□□□□ 0.21
VPS4A-202ENST00000562754 VEGFDO43915 354 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 ASMTLO95671 621 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 CEACAM5P06731 702 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 INHBAP08476 426 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 THEGLP0DJG4 465 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 ZNF7P17097 686 aaPredicted RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms