RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ZNHIT2Q9UHR6 403 aa16.53■□□□□ 0.24
CLK3-207ENST00000562389 GPR34Q9UPC5 381 aa16.53■□□□□ 0.24
CLK3-207ENST00000562389 ST14Q9Y5Y6 855 aa16.53■□□□□ 0.24
CLK3-207ENST00000562389 CCL22O00626 93 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 TMEM63AO94886 807 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 CDK14O94921 469 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 TRIM16O95361 564 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 ADRB1P08588 477 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 AK4P27144 223 aaPredicted RBP16.52■□□□□ 0.24
CLK3-207ENST00000562389 DUSP3P51452 185 aaPredicted RBP16.52■□□□□ 0.24
CLK3-207ENST00000562389 TERF1P54274 439 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 SESN2P58004 480 aaPredicted RBP16.52■□□□□ 0.24
CLK3-207ENST00000562389 ACVR1Q04771 509 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 TMEM115Q12893 351 aaPredicted RBP16.52■□□□□ 0.24
CLK3-207ENST00000562389 ILKQ13418 452 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 GTF2H3Q13889 308 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 NR0B2Q15466 257 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 GPR33Q49SQ1 333 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 PCID2Q5JVF3 399 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 ARMC3Q5W041 872 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 SLC35F3Q8IY50 421 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 ARL10Q8N8L6 244 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 MCUQ8NE86 351 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 OR13J1Q8NGT2 312 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 TAAR2Q9P1P5 351 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 ASIC3Q9UHC3 531 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 CRLS1Q9UJA2 301 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 SLC30A1Q9Y6M5 507 aa16.52■□□□□ 0.24
CLK3-207ENST00000562389 GOLGA4Q13439 2230 aaKnown RBP16.51■□□□□ 0.23
CLK3-207ENST00000562389 TRBV5-4A0A0C4DH59 114 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 RFPL3O75679 317 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 TUBB4AP04350 444 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 CDK4P11802 303 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 MLNP12872 115 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 ACTR1BP42025 376 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 RPIAP49247 311 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 ACTR1AP61163 376 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 DR1Q01658 176 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 DHX34Q14147 1143 aaKnown RBP16.51■□□□□ 0.23
CLK3-207ENST00000562389 RNASEH2BQ5TBB1 312 aaKnown RBP16.51■□□□□ 0.23
CLK3-207ENST00000562389 OGFOD3Q6PK18 319 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 SLC30A9Q6PML9 568 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 LRRTM4Q86VH4 590 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 PPIL6Q8IXY8 311 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 NAT8LQ8N9F0 302 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 KYQ8NBH2 561 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 FAM46DQ8NEK8 389 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 GPR156Q8NFN8 814 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 ADAMTS14Q8WXS8 1223 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 TTC25Q96NG3 672 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 MRM3Q9HC36 420 aaKnown RBP16.51■□□□□ 0.23
CLK3-207ENST00000562389 XAB2Q9HCS7 855 aaKnown RBP16.51■□□□□ 0.23
CLK3-207ENST00000562389 PRKAB1Q9Y478 270 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 PLEKHM1Q9Y4G2 1056 aa16.51■□□□□ 0.23
CLK3-207ENST00000562389 MED19A0JLT2 244 aaPredicted RBP16.5■□□□□ 0.23
CLK3-207ENST00000562389 CCDC78A2IDD5 438 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 EME2A4GXA9 379 aaPredicted RBP16.5■□□□□ 0.23
CLK3-207ENST00000562389 DNALI1O14645 258 aaPredicted RBP16.5■□□□□ 0.23
CLK3-207ENST00000562389 KMOO15229 486 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 NOBOXO60393 691 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 GP1BAP07359 652 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 MSH3P20585 1137 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 MGAT1P26572 445 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 PMLP29590 882 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 ARSDP51689 593 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 CLCNKAP51800 687 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 CACNG1Q06432 222 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 ZRANB3Q5FWF4 1079 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 CRTC3Q6UUV7 619 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 CHST15Q7LFX5 561 aaPredicted RBP16.5■□□□□ 0.23
CLK3-207ENST00000562389 ZNF572Q7Z3I7 529 aaPredicted RBP16.5■□□□□ 0.23
CLK3-207ENST00000562389 PCGF5Q86SE9 256 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 CAND1Q86VP6 1230 aaKnown RBP16.5■□□□□ 0.23
CLK3-207ENST00000562389 JAMLQ86YT9 394 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 ZNF547Q8IVP9 402 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 NXPE1Q8N323 547 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 SPATA4Q8NEY3 305 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 HEXDCQ8WVB3 486 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 ZNF778Q96MU6 729 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 TIMM29Q9BSF4 260 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 DPEP2Q9H4A9 486 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 SPATS2LQ9NUQ6 558 aaKnown RBP16.5■□□□□ 0.23
CLK3-207ENST00000562389 SYBUQ9NX95 663 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 SIRPGQ9P1W8 387 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 SLC2A6Q9UGQ3 507 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 CACNA1AO00555 2505 aa16.5■□□□□ 0.23
CLK3-207ENST00000562389 PTPRBP23467 1997 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 B4DGG1 531 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 KIF2AO00139 706 aaPredicted RBP16.49■□□□□ 0.23
CLK3-207ENST00000562389 MYF5P13349 255 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 ACP5P13686 325 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 ACRV1P26436 265 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 IVDP26440 423 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 AKT1P31749 480 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 FOXN2P32314 431 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 CRADDP78560 199 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 GUSBP11Q6P575 273 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 AFTPHQ6ULP2 937 aa16.49■□□□□ 0.23
CLK3-207ENST00000562389 RAB44Q7Z6P3 723 aaPredicted RBP16.49■□□□□ 0.23
CLK3-207ENST00000562389 HOOK3Q86VS8 718 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms