RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ELFN1P0C7U0 828 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 GZMAP12544 262 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 ERCC2P18074 760 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 CD1CP29017 333 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 CSF2RBP32927 897 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 HSPA9P38646 679 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 CD97P48960 835 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 RENBPP51606 427 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 BCL2L1Q07817 233 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 DPYSQ14117 519 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 CA9Q16790 459 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 FHL5Q5TD97 284 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 PNCKQ6P2M8 343 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 SRRM1Q8IYB3 904 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 PELI3Q8N2H9 469 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 TEX19Q8NA77 164 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 GPBAR1Q8TDU6 330 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 SSC4DQ8WTU2 575 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 GAL3ST3Q96A11 431 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 CELF6Q96J87 481 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 COQ10AQ96MF6 247 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 NSMCE3Q96MG7 304 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 PEBP4Q96S96 227 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 SNRNP25Q9BV90 132 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 CINPQ9BW66 212 aaPredicted RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 LGR4Q9BXB1 951 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 TEX101Q9BY14 249 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 DHX35Q9H5Z1 703 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 WDR26Q9H7D7 661 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 CBX8Q9HC52 389 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 ANO10Q9NW15 660 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 TRNAU1APQ9NX07 287 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 DDX56Q9NY93 547 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 PCDHB14Q9Y5E9 798 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 ZNF106Q9H2Y7 1883 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 CSMD1Q96PZ7 3565 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 PRSS38A1L453 326 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 A8MX80 341 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 PSMD11O00231 422 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 TEX33O43247 280 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 WIPF1O43516 503 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 VPS4BO75351 444 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 LRCH4O75427 683 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 ECEL1O95672 775 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 PEX11BO96011 259 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 MYCLP1P12525 358 aaPredicted RBP9.96□□□□□ -0.82
SCFD1-220ENST00000556486 PSMA2P25787 234 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 AK4P27144 223 aaPredicted RBP9.96□□□□□ -0.82
SCFD1-220ENST00000556486 ARNTP27540 789 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 PCK1P35558 622 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 PRKCIP41743 596 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 MASP1P48740 699 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 DPYSL2Q16555 572 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 RALGPS1Q5JS13 557 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 CAPRIN2Q6IMN6 1127 aaKnown RBP9.96□□□□□ -0.82
SCFD1-220ENST00000556486 TIPARPQ7Z3E1 657 aaKnown RBP9.96□□□□□ -0.82
SCFD1-220ENST00000556486 KDELC2Q7Z4H8 507 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 TMEM135Q86UB9 458 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 KIAA1524Q8TCG1 905 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 APOBEC4Q8WW27 367 aaKnown RBP9.96□□□□□ -0.82
SCFD1-220ENST00000556486 STARD8Q92502 1023 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 SLC45A3Q96JT2 553 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 CATSPER2Q96P56 530 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 MCCC1Q96RQ3 725 aaPredicted RBP9.96□□□□□ -0.82
SCFD1-220ENST00000556486 RBSNQ9H1K0 784 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 SP110Q9HB58 689 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 SEPT11Q9NVA2 429 aaKnown RBP9.96□□□□□ -0.82
SCFD1-220ENST00000556486 GPATCH2LQ9NWQ4 482 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 TAS2R14Q9NYV8 317 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 VPS4AQ9UN37 437 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 PPIL1Q9Y3C6 166 aa9.96□□□□□ -0.82
SCFD1-220ENST00000556486 ABCA12Q86UK0 2595 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 TRBV23OR9-2A0A075B6M9 112 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 HGSO14964 777 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 PRPSAP2O60256 369 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 SMNDC1O75940 238 aaKnown RBP eCLIP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 RNF8O76064 485 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 HEXIM1O94992 359 aaKnown RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 ATE1O95260 518 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 CCNB1P14635 433 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 POU3F2P20265 443 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 NFKBIAP25963 317 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 MIPP30301 263 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 CSTF2P33240 577 aaKnown RBP eCLIP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 DCTP40126 519 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 GPR3P46089 330 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 LIMK2P53671 638 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 DPTQ07507 201 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 SLC10A7Q0GE19 358 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 BIRC2Q13490 618 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 CNGA3Q16281 694 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 STX1AQ16623 288 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 DBN1Q16643 649 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 SLC30A9Q6PML9 568 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 ASB18Q6ZVZ8 466 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 C19orf47Q8N9M1 422 aaKnown RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 AGBL5Q8NDL9 886 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 KIAA1143Q96AT1 154 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 DTD2Q96FN9 168 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 SCARF2Q96GP6 870 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms