RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PPM1BO75688 479 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 TCEA3O75764 348 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ERBB2P04626 1255 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 GSNP06396 782 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 APOA4P06727 396 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 UNGP13051 313 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF143P52747 638 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 OGDHQ02218 1023 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 RUNX1T1Q06455 604 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 DNASE1L3Q13609 305 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ADGRE1Q14246 886 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PGM5Q15124 567 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 TBC1D25Q3MII6 688 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 GRTP1Q5TC63 336 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 LRRC38Q5VT99 294 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 SLCO4C1Q6ZQN7 724 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ZBTB8BQ8NAP8 495 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 TRPC4APQ8TEL6 797 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 GATA6Q92908 595 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 FDXACB1Q9BRP7 624 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 RTKNQ9BST9 563 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 COL25A1Q9BXS0 654 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 MAGEB5Q9BZ81 275 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 WDCPQ9H6R7 721 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 RASSF1Q9NS23 344 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 VPS51Q9UID3 782 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 HES2Q9Y543 173 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 COL6A3P12111 3177 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 C5orf42Q9H799 3197 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 FAM95CA0A1B0GW59 222 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ASB14A6NK59 587 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 SLCO1B7G3V0H7 640 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 H0Y858 1186 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 M0QZ92 97 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PSMD11O00231 422 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 DHX15O43143 795 aaKnown RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 DYNC1LI2O43237 492 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 B4GALT5O43286 388 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PGK2P07205 417 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 LINC00032P0C843 101 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PABPC4LP0CB38 370 aaKnown RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 MYL4P12829 197 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 HGFP14210 728 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ITGB6P18564 788 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 POU3F2P20265 443 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ADCYAP1R1P41586 468 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 MAGEA10P43363 369 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 NAMPTP43490 491 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CXCR3P49682 368 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 FLT3LGP49771 235 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CNTN2Q02246 1040 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 TNFAIP2Q03169 654 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ADIGQ0VDE8 80 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 SIM2Q14190 667 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 FAM219BQ5XKK7 198 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 KCTD8Q6ZWB6 473 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 TFAP2DQ7Z6R9 452 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 HORMAD1Q86X24 394 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CHSY1Q86X52 802 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CCDC117Q8IWD4 279 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PYROXD2Q8N2H3 581 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ARHGEF39Q8N4T4 335 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 APPL2Q8NEU8 664 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 OR9I1Q8NGQ6 314 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ITFG1Q8TB96 612 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 SKA1Q96BD8 255 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 C12orf43Q96C57 262 aaKnown RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CPNE1Q99829 537 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 FRMD8P1Q9BZ68 369 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 TPK1Q9H3S4 243 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 EXD2Q9NVH0 621 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 RBM22Q9NW64 420 aaKnown RBP eCLIP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 TMEM161AQ9NX61 479 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 IMPAD1Q9NX62 359 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CDC14AQ9UNH5 594 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 RAP2CQ9Y3L5 183 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PCDHA11Q9Y5I1 949 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 A0A088AWK7 358 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 LACTBL1A8MY62 500 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 E7ENX8 843 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 BIRC5O15392 142 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 SYNCRIPO60506 623 aaKnown RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CYP7B1O75881 506 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 RGS20O76081 388 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 GUCA1CO95843 209 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 NFICP08651 508 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CRABP2P29373 138 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CD151P48509 253 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 IDH2P48735 452 aaKnown RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 MAP3K7CLP57077 242 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CCNA1P78396 465 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 IRF9Q00978 393 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 LAMTOR4Q0VGL1 99 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF235Q14590 738 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 TIGD2Q4W5G0 525 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 BTBD8Q5XKL5 378 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ARHGAP17Q68EM7 881 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 NCCRP1Q6ZVX7 275 aaPredicted RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms