RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 A6NNZ2 444 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 CXorf49A8MYA2 514 aaPredicted RBP15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 POC1B-GALNT4F8VUJ3 575 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 KPNA5O15131 536 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 MAP3K13O43283 966 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 AHSGP02765 367 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 SHBGP04278 402 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 ITGA2BP08514 1039 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 MSH3P20585 1137 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 HTR1BP28222 390 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 HOXD12P35452 270 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 SKIV2L2P42285 1042 aaKnown RBP15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 CDK3Q00526 305 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 POU4F1Q01851 419 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 CSTF1Q05048 431 aaKnown RBP15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 CTBP1Q13363 440 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 GTF2H3Q13889 308 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 KRT71Q3SY84 523 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 FAM45BPQ6NSW5 357 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 MACC1Q6ZN28 852 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 TIFABQ6ZNK6 161 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 RABEPKQ7Z6M1 372 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 FAM45AQ8TCE6 357 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 ACMSDQ8TDX5 336 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 CABS1Q96KC9 395 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 P2RY12Q9H244 342 aa15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 FNDC3AQ9Y2H6 1198 aaKnown RBP15.86■□□□□ 0.13
PRPF40A-212ENST00000545856 CACNA1HO95180 2353 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 ABCA7Q8IZY2 2146 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 PRR23AA6NEV1 266 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 GOLGA8KD6RF30 607 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 GOLGA8TH3BQL2 631 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 EIF3FO00303 357 aaPredicted RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 TNFRSF10CO14798 259 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 KCNJ13O60928 360 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 FSBPO95073 299 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 OR56A5P0C7T3 313 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 GCAP28676 217 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 AKT1P31749 480 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 IGFALSP35858 605 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 SLC26A3P40879 764 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 FNTBP49356 437 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 PFN3P60673 137 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 RACK1P63244 317 aaKnown RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 PTK2BQ14289 1009 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 SEMA3AQ14563 771 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 BCL7AQ4VC05 210 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 CEP85LQ5SZL2 805 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 UBAP2Q5T6F2 1119 aaKnown RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 UGT3A1Q6NUS8 523 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 RFLNAQ6ZTI6 216 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 HEATR4Q86WZ0 1026 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 ZBTB44Q8NCP5 570 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 UHMK1Q8TAS1 419 aaKnown RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 SKA1Q96BD8 255 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 ZC3H10Q96K80 434 aaKnown RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 SH3GL2Q99962 352 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 MED4Q9NPJ6 270 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 GPR27Q9NS67 375 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 IL1RAPL1Q9NZN1 696 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 SUSD2Q9UGT4 822 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 MBD1Q9UIS9 605 aaPredicted RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 CNOT6Q9ULM6 557 aaKnown RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 ACTL7BQ9Y614 415 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 PSAT1Q9Y617 370 aa15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 DNMT3AQ9Y6K1 912 aaPredicted RBP15.85■□□□□ 0.13
PRPF40A-212ENST00000545856 CCDC189A1A4V9 331 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 MEI4A8MW99 385 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 PRR5-ARHGAP8B1AHC4 643 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 SLC31A1O15431 190 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 RGS16O15492 202 aaPredicted RBP15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 GALR2O43603 387 aaPredicted RBP15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 UGT1A9O60656 530 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 RHOBTB1O94844 696 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 FTH1P02794 183 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 PCCBP05166 539 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 ATP1B2P14415 290 aaPredicted RBP15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 PKMP14618 531 aaKnown RBP15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 UGT1A6P19224 532 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 UGT1A1P22309 533 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 UGT1A4P22310 534 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 GABRB3P28472 473 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 MAT2AP31153 395 aaKnown RBP15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 UGT1A3P35503 534 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 UGT1A5P35504 534 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 PXNP49023 591 aaPredicted RBP15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 SERPINB8P50452 374 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 MPP1Q00013 466 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 PLOD1Q02809 727 aaPredicted RBP15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 INPP5AQ14642 412 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 NFATC4Q14934 902 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 EFTUD2Q15029 972 aaKnown RBP eCLIP15.84■□□□□ 0.132e-7■■■■□ 22.5
PRPF40A-212ENST00000545856 PMS2CLQ68D20 193 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 LRRC8EQ6NSJ5 796 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 MFSD2AQ8NA29 543 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 GDAP1Q8TB36 358 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 RLN3Q8WXF3 142 aa15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 LINC00615Q96LM1 132 aaPredicted RBP15.84■□□□□ 0.13
PRPF40A-212ENST00000545856 AARSD1Q9BTE6 412 aaKnown RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms