RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 KLC4Q9NSK0 619 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 DTLQ9NZJ0 730 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 MYO1AQ9UBC5 1043 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 SLC23A2Q9UGH3 650 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 LNPEPQ9UIQ6 1025 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 MYO6Q9UM54 1294 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 VPS4AQ9UN37 437 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 SCINQ9Y6U3 715 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 PIPSLA2A3N6 862 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 LRRC53A6NM62 1247 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 TTLL8A6PVC2 850 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 DDX3XO00571 662 aaKnown RBP eCLIP17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 SEMA7AO75326 666 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 TIAF1O95411 115 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 RECKO95980 971 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 GARSP41250 739 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 SLC25A11Q02978 314 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 NIPAL4Q0D2K0 466 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 MMRN1Q13201 1228 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 DNASE1L3Q13609 305 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 FHL5Q5TD97 284 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 PRSS42Q7Z5A4 293 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 LRRC49Q8IUZ0 686 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 ANKRD20A12PQ8NF67 263 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 CPT1CQ8TCG5 803 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 CT55Q8WUE5 264 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 TEKT4Q8WW24 435 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 RSC1A1Q92681 617 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 EID2BQ96D98 161 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 RUFY1Q96T51 708 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 OR2AG1Q9H205 316 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 OSGEPL1Q9H4B0 414 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 PCDH9Q9HC56 1237 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 LHX9Q9NQ69 397 aa17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 RCOR3Q9P2K3 495 aaPredicted RBP17.55■□□□□ 0.4
CLSTN3-214ENST00000542663 CELSR2Q9HCU4 2923 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 CHUKO15111 745 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 CD48P09326 243 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 CES1P23141 567 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 RPL26P61254 145 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 GALNT2Q10471 571 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 RBM43Q6ZSC3 357 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 FAM71BQ8TC56 605 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 SSC4DQ8WTU2 575 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 LRRN4Q8WUT4 740 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 KLHL6Q8WZ60 621 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 ACTL8Q9H568 366 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 AKIRIN1Q9H9L7 192 aaPredicted RBP17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 PKD2L2Q9NZM6 624 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 PADI1Q9ULC6 663 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 RPL26L1Q9UNX3 145 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 CENPEQ02224 2701 aa17.54■□□□□ 0.4
CLSTN3-214ENST00000542663 MATN3O15232 486 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 RASSF9O75901 435 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 VIPP01282 170 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 HLA-DQB2P05538 268 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 CCNYL3P0C7X3 344 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 BRAFP15056 766 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 AMD1P17707 334 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 CAPZBP47756 277 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 ZNF165P49910 485 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 MYL5Q02045 173 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 QPCTQ16769 361 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 PLA2G4EQ3MJ16 856 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 NADK2Q4G0N4 442 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 ANKRD20A8PQ5CZ79 823 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 CACHD1Q5VU97 1274 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 CPZQ66K79 652 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 NCBP2-AS2Q69YL0 99 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 CRTC3Q6UUV7 619 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 ADGRG6Q86SQ4 1221 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 EFCAB3Q8N7B9 438 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 BRD8Q9H0E9 1235 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 MRPL47Q9HD33 250 aaKnown RBP17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 RBM22Q9NW64 420 aaKnown RBP eCLIP17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 AMACRQ9UHK6 382 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 MAP4K5Q9Y4K4 846 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 TTLL3Q9Y4R7 772 aa17.53■□□□□ 0.4
CLSTN3-214ENST00000542663 CCDC88CQ9P219 2028 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 RGSL1A5PLK6 1076 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 ANKRD66B4E2M5 251 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 SORBS2O94875 1100 aaKnown RBP17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 MMP2P08253 660 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 MYBL1P10243 752 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 SPTBP11277 2137 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 CDK11BP21127 795 aaKnown RBP17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 CASP14P31944 242 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 PRKCIP41743 596 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 PPP1CAP62136 330 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 RPS18P62269 152 aaKnown RBP17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 LAMB3Q13751 1172 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 PAFAH1B3Q15102 231 aaKnown RBP17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 SEPT7Q16181 437 aaKnown RBP17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 ASIC2Q16515 512 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 FAM92BQ6ZTR7 304 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 PPP1R3BQ86XI6 285 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 GPR26Q8NDV2 337 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 FATE1Q969F0 183 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 BTBD6Q96KE9 485 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms