RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CCDC153Q494R4 210 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 KIAA0930Q6ICG6 404 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 SDCCAG8Q86SQ7 713 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 IGDCC3Q8IVU1 814 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 HOMEZQ8IX15 550 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 FAM217AQ8IXS0 508 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 BANPQ8N9N5 519 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 ZNF398Q8TD17 642 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 ZNF473Q8WTR7 871 aaKnown RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 ZNF669Q96BR6 464 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 PRR11Q96HE9 360 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 SLC46A1Q96NT5 459 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 SIKE1Q9BRV8 207 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 SPON2Q9BUD6 331 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 FICDQ9BVA6 458 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 ACE2Q9BYF1 805 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 PITPNM3Q9BZ71 974 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 MUC3BQ9H195 1237 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 C6orf106Q9H6K1 298 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 ATP13A1Q9HD20 1204 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 NT5MQ9NPB1 228 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 ITM2CQ9NQX7 267 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 C20orf96Q9NUD7 363 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 SYBUQ9NX95 663 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 TLK1Q9UKI8 766 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 AGO1Q9UL18 857 aaKnown RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 ARHGAP26Q9UNA1 814 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 SATB2Q9UPW6 733 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 TCAF1Q9Y4C2 921 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 LOC285095A0A1B0GVY8 99 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CCDC189A1A4V9 331 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 KLF11O14901 512 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 SLC7A4O43246 635 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 ATP9BO43861 1147 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 SIN3BO75182 1162 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 PMPCBO75439 489 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 ASMTLO95671 621 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 NDST3O95803 873 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 IL1BP01584 269 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 HLA-DQB2P05538 268 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 TCF3P15923 654 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 HOXB4P17483 251 aaPredicted RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 CKMT2P17540 419 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 GRK2P25098 689 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 GCAP28676 217 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CRABP2P29373 138 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CCNFP41002 786 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 EIF2DP41214 584 aaKnown RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 GRIA4P48058 902 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CSNK1DP48730 415 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 PGFP49763 221 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 SLC12A2P55011 1212 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 AP1S1P61966 158 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 GAD2Q05329 585 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CDK18Q07002 472 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 NIPAL4Q0D2K0 466 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 BNIP3Q12983 259 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 ILKQ13418 452 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 TGIF1Q15583 401 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 ALFQ53S48 1182 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 FAM133BQ5BKY9 247 aaKnown RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 C3orf38Q5JPI3 329 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CDCP2Q5VXM1 449 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 NADSYN1Q6IA69 706 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 MRNIPQ6NTE8 343 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 PACS1Q6VY07 963 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 FAM124AQ86V42 546 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 KCNMB4Q86W47 210 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CNTN4Q8IWV2 1026 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CHPFQ8IZ52 775 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CYP4X1Q8N118 509 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 DCAF4L2Q8NA75 395 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 RDH11Q8TC12 318 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 BRSK1Q8TDC3 778 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 DENND1AQ8TEH3 1009 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 PTPRN2Q92932 1015 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 TADA1Q96BN2 335 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 OXNAD1Q96HP4 312 aaPredicted RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 VPS39Q96JC1 886 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 ZNF317Q96PQ6 595 aaPredicted RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 TTC1Q99614 292 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 GABRG3Q99928 467 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 PAIP2Q9BPZ3 127 aaKnown RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 MGME1Q9BQP7 344 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 TUBB6Q9BUF5 446 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 MLPHQ9BV36 600 aaPredicted RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 CEP41Q9BYV8 373 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 SLC2A11Q9BYW1 496 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 MKRN2Q9H000 416 aaKnown RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 KDM4CQ9H3R0 1056 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 RHOJQ9H4E5 214 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 NOL6Q9H6R4 1146 aaKnown RBP8.34□□□□□ -1.07
CHD4-208ENST00000540960 KLHL14Q9P2G3 628 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 CTNNAL1Q9UBT7 734 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 ZNF212Q9UDV6 495 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 STARD13Q9Y3M8 1113 aa8.34□□□□□ -1.07
CHD4-208ENST00000540960 C2orf81A6NN90 581 aa8.33□□□□□ -1.08
CHD4-208ENST00000540960 TCP11X1B4DZS4 312 aa8.33□□□□□ -1.08
CHD4-208ENST00000540960 LEFTY2O00292 366 aa8.33□□□□□ -1.08
CHD4-208ENST00000540960 INSIG1O15503 277 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms